Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05480 ATGGTTAACCAATATGACAAAATTTGGCGTTTGGTGGTGGTGGAGTACCGCGAAACAAAATTGCTCTTTACTTTCGATGGAGTTTTATTCTCCTTCAGAGGTAACAAATTTAGTGGAGATCTACCATTGAAAAAGGTGAAGGTTTACCATTTTGCTTTCGTTGCCACCGTCGTGCTCAAAGATAGCGACGGCGTTCTATTCTCATCTAACAATTTCAATTCATTCATTCCTCAATTTCTCAACTCGTTTCTTCGTGACCTAACGATTCCTCAAGATGCAAATCTTCCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAACGTCTCATCTTCGCTGGAAAGCAGTTGGAAGACGGAAGGACTCTTGCTGATTACAATATCCAGAAGGAGTCCACGCTTCATCTTGTTCTCCGTCTGCGTGGAGGTATGCAGATCTTCGTTAAGACTCTCACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCTGACACCATCGACAACGTTAAGGCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGTCGCACCCTTGCCGACTACAATATCCAGAAGGAGTCAACCCTTCACCTTGTGCTTCGTTTGAGGGGTGGTATGCAGATTTTTGTCAAGACTTTGACCGGGAAGACCATAACCTTGGAGGTGGAGAGCTCAGACACCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGTTGATCTTTGCAGGTAAACAGTTGGAAGATGGAAGGACCCTTGCGGACTACAATATCCAGAAGGAGTCTACCCTTCACCTTGTGCTGCGTCTGAGGGGTGGTATGCAGATTTTTGTTAAGACCTTGACTGGTAAGACCATTACCCTGGAGGTGGAGAGCTCGGATACCATTGATAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAGCAGAGGTTGATCTTTGCAGGCAAACAGTTGGAGGATGGAAGGACCCTTGCTGACTACAATATTCAGAAGGAGTCCACCCTTCACCTTGTGCTCCGTCTTCGTGGTGGTTTTTAA 1122 0.4661 MVNQYDKIWRLVVVEYRETKLLFTFDGVLFSFRGNKFSGDLPLKKVKVYHFAFVATVVLKDSDGVLFSSNNFNSFIPQFLNSFLRDLTIPQDANLPKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05480 373 ProSiteProfiles Ubiquitin domain profile. 297 372 IPR000626 GO:0005515
Trre2g05480 373 ProSiteProfiles Ubiquitin domain profile. 221 296 IPR000626 GO:0005515
Trre2g05480 373 ProSitePatterns Ubiquitin domain signature. 247 272 IPR019954 -
Trre2g05480 373 FunFam Polyubiquitin 3 221 296 - -
Trre2g05480 373 FunFam Polyubiquitin 5 92 144 - -
Trre2g05480 373 SUPERFAMILY Ubiquitin-like 296 372 IPR029071 -
Trre2g05480 373 ProSiteProfiles Ubiquitin domain profile. 145 220 IPR000626 GO:0005515
Trre2g05480 373 ProSitePatterns Ubiquitin domain signature. 323 348 IPR019954 -
Trre2g05480 373 SUPERFAMILY Ubiquitin-like 220 296 IPR029071 -
Trre2g05480 373 ProSiteProfiles Ubiquitin domain profile. 97 144 IPR000626 GO:0005515
Trre2g05480 373 ProSitePatterns Ubiquitin domain signature. 171 196 IPR019954 -
Trre2g05480 373 PANTHER UBIQUITIN 145 222 - -
Trre2g05480 373 Pfam Ubiquitin family 97 142 IPR000626 GO:0005515
Trre2g05480 373 Pfam Ubiquitin family 223 294 IPR000626 GO:0005515
Trre2g05480 373 Pfam Ubiquitin family 299 370 IPR000626 GO:0005515
Trre2g05480 373 Pfam Ubiquitin family 147 218 IPR000626 GO:0005515
Trre2g05480 373 FunFam Polyubiquitin 3 145 220 - -
Trre2g05480 373 SMART ubq_7 80 140 IPR000626 GO:0005515
Trre2g05480 373 SMART ubq_7 297 368 IPR000626 GO:0005515
Trre2g05480 373 SMART ubq_7 145 216 IPR000626 GO:0005515
Trre2g05480 373 SMART ubq_7 221 292 IPR000626 GO:0005515
Trre2g05480 373 SUPERFAMILY Ubiquitin-like 97 144 IPR029071 -
Trre2g05480 373 CDD Ubl_ubiquitin 145 220 - -
Trre2g05480 373 PRINTS Ubiquitin signature 176 196 IPR019956 -
Trre2g05480 373 PRINTS Ubiquitin signature 197 218 IPR019956 -
Trre2g05480 373 PRINTS Ubiquitin signature 155 175 IPR019956 -
Trre2g05480 373 CDD Ubl_ubiquitin 221 296 - -
Trre2g05480 373 CDD Ubl_ubiquitin 297 372 - -
Trre2g05480 373 Gene3D - 145 220 - -
Trre2g05480 373 Gene3D - 221 297 - -
Trre2g05480 373 Gene3D - 96 144 - -
Trre2g05480 373 Gene3D - 298 373 - -
Trre2g05480 373 FunFam Polyubiquitin 3 297 372 - -
Trre2g05480 373 SUPERFAMILY Ubiquitin-like 144 220 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05480 Trre-Chr2 61306246 61313193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05480 297 373 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.54e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05480 K08770 - tcc:18593653 539.265