LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g05480	ATGGTTAACCAATATGACAAAATTTGGCGTTTGGTGGTGGTGGAGTACCGCGAAACAAAATTGCTCTTTACTTTCGATGGAGTTTTATTCTCCTTCAGAGGTAACAAATTTAGTGGAGATCTACCATTGAAAAAGGTGAAGGTTTACCATTTTGCTTTCGTTGCCACCGTCGTGCTCAAAGATAGCGACGGCGTTCTATTCTCATCTAACAATTTCAATTCATTCATTCCTCAATTTCTCAACTCGTTTCTTCGTGACCTAACGATTCCTCAAGATGCAAATCTTCCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAGCAACGTCTCATCTTCGCTGGAAAGCAGTTGGAAGACGGAAGGACTCTTGCTGATTACAATATCCAGAAGGAGTCCACGCTTCATCTTGTTCTCCGTCTGCGTGGAGGTATGCAGATCTTCGTTAAGACTCTCACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCTGACACCATCGACAACGTTAAGGCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGTCGCACCCTTGCCGACTACAATATCCAGAAGGAGTCAACCCTTCACCTTGTGCTTCGTTTGAGGGGTGGTATGCAGATTTTTGTCAAGACTTTGACCGGGAAGACCATAACCTTGGAGGTGGAGAGCTCAGACACCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGTTGATCTTTGCAGGTAAACAGTTGGAAGATGGAAGGACCCTTGCGGACTACAATATCCAGAAGGAGTCTACCCTTCACCTTGTGCTGCGTCTGAGGGGTGGTATGCAGATTTTTGTTAAGACCTTGACTGGTAAGACCATTACCCTGGAGGTGGAGAGCTCGGATACCATTGATAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAGCAGAGGTTGATCTTTGCAGGCAAACAGTTGGAGGATGGAAGGACCCTTGCTGACTACAATATTCAGAAGGAGTCCACCCTTCACCTTGTGCTCCGTCTTCGTGGTGGTTTTTAA	1122	0.4661	MVNQYDKIWRLVVVEYRETKLLFTFDGVLFSFRGNKFSGDLPLKKVKVYHFAFVATVVLKDSDGVLFSSNNFNSFIPQFLNSFLRDLTIPQDANLPKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF	373

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g05480	373	ProSiteProfiles	Ubiquitin domain profile.	297	372	IPR000626	GO:0005515
	Trre2g05480	373	ProSiteProfiles	Ubiquitin domain profile.	221	296	IPR000626	GO:0005515
	Trre2g05480	373	ProSitePatterns	Ubiquitin domain signature.	247	272	IPR019954	-
	Trre2g05480	373	FunFam	Polyubiquitin 3	221	296	-	-
	Trre2g05480	373	FunFam	Polyubiquitin 5	92	144	-	-
	Trre2g05480	373	SUPERFAMILY	Ubiquitin-like	296	372	IPR029071	-
	Trre2g05480	373	ProSiteProfiles	Ubiquitin domain profile.	145	220	IPR000626	GO:0005515
	Trre2g05480	373	ProSitePatterns	Ubiquitin domain signature.	323	348	IPR019954	-
	Trre2g05480	373	SUPERFAMILY	Ubiquitin-like	220	296	IPR029071	-
	Trre2g05480	373	ProSiteProfiles	Ubiquitin domain profile.	97	144	IPR000626	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g05480	Trre-Chr2	61306246	61313193	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g05480	297	373	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	98.701	1.54e-47	156

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g05480	K08770		-	tcc:18593653	539.265

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