Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05475 ATGAGCAGCTCTAACAACCCCTTGTACAATGAAGCAAAAAAGTATCTCAAAGAGGTGAAATATGCTTTTCGCAACGAAAAGCATATTTACATGTCATTCTTAAGACTCTTTAAAGATTTCAGGTGCCAAAGAATTGACTTAGAAAATGTCAAAGTAGAGGTGGCAAGGATGTTTCGAGACCATGGAGAATTAATTTCAGGATTCAACTACTTCTTGCCGGAAGGACATGAAATATAA 237 0.3629 MSSSNNPLYNEAKKYLKEVKYAFRNEKHIYMSFLRLFKDFRCQRIDLENVKVEVARMFRDHGELISGFNYFLPEGHEI 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05475 78 FunFam Paired amphipathic helix protein Sin3 11 73 - -
Trre2g05475 78 Pfam Paired amphipathic helix repeat 28 72 IPR003822 GO:0006355
Trre2g05475 78 Gene3D Paired amphipathic helix 11 73 IPR036600 GO:0006355
Trre2g05475 78 SUPERFAMILY PAH2 domain 4 74 IPR036600 GO:0006355
Trre2g05475 78 PANTHER SIN3B-RELATED 10 78 IPR039774 GO:0003714
Trre2g05475 78 ProSiteProfiles PAH domain profile. 1 75 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05475 Trre-Chr2 61285761 61285997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05475 11 78 WRKY Transcription Factor Family AT4G12020 32.353 7.43e-07 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre2g05475 PAH 9.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05475 - K11644 var:108321439 71.2478