Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05472 ATGGCATCATCCTCATCTTCATTCCTTGGTATTGATGACACCGTAGACGATTTCTACTTCTCTGTTGTCTCCGATGATGAAATCAACCCTGACCTCCCTGTCACTGATGACAAGTACGCTGAAGCATTACAGTTTCAAGAAACCTTGTTGGCATCTCTCATCACTTCTCACCGAATCCCCTCCTCCTCCATGTCACCACCGCCATCATTTCCGTGCGTAGCATCTTCATCACAAACTGTCCATGAAGAGTTACTGTTCGAGGAAACCCTTATTATGGCTTCCTCCTCATCCACATTACCACCGCCATTCGTAGCATCTTCATCAAAGGCTATTGATGACACTGTTCTCACCGAAAAAGAAGCTGATGAATCATCAATAGTTATTTGCGAGATTTGTACTGAAGCAAAAAGGACCAATGAAATGTTCAGGAACCAGAGATGTTACCATTCCTTTTGTTGTGAATGTGTTGTCAAACAAGTGTCAACAAAAATCCAAGACAACATAACAAATGTGTCTTGTCCTGGTTTGAACTGTAAGGGTTTCTTGGAGCTTGAATCTTGTCGGTCATTGCTTCCCAAAGAATTGATTGATAGGTGGGATGATGCATTATCTGAGGCTCTTTTACTTACTGTTCCTAAGTTCTACTGTCCCTTTAAGGATTGTTCTGCAATGTTGCTTACTGAGAATGAAGGTGTGGGAGATATTAGAGAATCTGAATGCCCTTTTTGTCATAGACTGTTTTGTGCAAGGTGTCATGTTACTTGGCATCCTGGGGTTGGTTGTGAGGAGTACCAGAAAATGAATCCGGATGAAAGAGGGAGGGAAGATCTTCTTCTTAGAGAGCTTGCTAATCAGAAGAAATGGAAAAGGTGTCCTAGATGTAAATTCTATGTTGAGAAAAGGGATGGTTGTTTGCATATGACTTGCAGGTGCAAGTTTCAGTTTTGCTATGCTTGTGGAGAAAAATGGACAACTACTCATGTCACGATGAATCATGCACGTTTTGATCTTATTTGCTATTACTTTCTTTTGTAA 1035 0.4116 MASSSSSFLGIDDTVDDFYFSVVSDDEINPDLPVTDDKYAEALQFQETLLASLITSHRIPSSSMSPPPSFPCVASSSQTVHEELLFEETLIMASSSSTLPPPFVASSSKAIDDTVLTEKEADESSIVICEICTEAKRTNEMFRNQRCYHSFCCECVVKQVSTKIQDNITNVSCPGLNCKGFLELESCRSLLPKELIDRWDDALSEALLLTVPKFYCPFKDCSAMLLTENEGVGDIRESECPFCHRLFCARCHVTWHPGVGCEEYQKMNPDERGREDLLLRELANQKKWKRCPRCKFYVEKRDGCLHMTCRCKFQFCYACGEKWTTTHVTMNHARFDLICYYFLL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05472 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 207 IPR013083 -
Trre2g05472 344 ProSiteProfiles TRIAD supradomain profile. 125 336 IPR044066 -
Trre2g05472 344 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Trre2g05472 344 FunFam RBR-type E3 ubiquitin transferase 124 210 - -
Trre2g05472 344 SUPERFAMILY RING/U-box 272 336 - -
Trre2g05472 344 FunFam RBR-type E3 ubiquitin transferase 263 334 - -
Trre2g05472 344 Gene3D - 258 337 - -
Trre2g05472 344 CDD Rcat_RBR_unk 287 323 - -
Trre2g05472 344 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 77 324 IPR031127 GO:0004842|GO:0016567
Trre2g05472 344 Pfam IBR domain, a half RING-finger domain 279 327 IPR002867 GO:0008270
Trre2g05472 344 Pfam IBR domain, a half RING-finger domain 213 261 IPR002867 GO:0008270
Trre2g05472 344 CDD BRcat_RBR_unk 212 264 - -
Trre2g05472 344 SUPERFAMILY RING/U-box 123 206 - -
Trre2g05472 344 ProSiteProfiles Zinc finger RING-type profile. 129 174 IPR001841 -
Trre2g05472 344 SMART ibrneu5 271 339 IPR002867 GO:0008270
Trre2g05472 344 SMART ibrneu5 197 261 IPR002867 GO:0008270
Trre2g05472 344 SUPERFAMILY RING/U-box 201 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05472 Trre-Chr2 61262755 61265648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05472 129 320 C3H Transcription Factor Family AT2G19610 30.348 9.24e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05472 K11975 - cave:132186566 346.665