Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g05471 | ATGGCATCATCCTCATCTTCATTCCTTGGTATTGATGACACCGTAGACGATTTCTACTTCTCTGTTGTCTCCGATGATGAAATCAACCCTGACCTCCCTGTCACTGATGACAAGTACGCTGAAGCATTACAGTTTCAAGAAACCTTGTTGGCATCTCTCATCACTTCTCACCGAATCCCCTCCTCCTCCATGTCACCACCGCCATCATTTCCGTGCGTAGCATCTTCATCACAAACTGTCCATGAAGAGTTACTGTTCGAGGAAACCCTTATTATGGCTTCCTCCTCATCCACATTACCACCGCCATTCGTAGCATCTTCATCAAAGGCTATTGATGACACTGTTCTCACCGAAAAAGAAGCTGATGAATCATCAATAGTTATTTGCGAGATTTGTACTGAAGCAAAAAGGACCAATGAAATGTTCAGGAACCAGAGATGTTACCATTCCTTTTGTTGTGAATGTGTTGTCAAACAAGTGTCAACAAAAATCCAAGACAACATAACAAATGTGTCTTGTCCTGGTTTGAACTGTAAGGGTTTCTTGGAGCTTGAATCTTGTCGGTCATTGCTTCCCAAAGAATTGATTGATAGGTGGGATGATGCATTATCTGAGGCTCTTTTACTTACTGTTCCTAAGTTCTACTGTCCCTTTAAGGATTGTTCTGCAATGTTGCTTACTGAGAATGAAGGTGTGGGAGATATTAGAGAATCTGAATGCCCTTTTTGTCATAGACTGTTTTGTGCAAGGTGTCATGTTACTTGGCATCCTGGGGTTGGTTGTGAGGAGTACCAGAAAATGAATCCGGATGAAAGAGGGAGGGAAGATCTTCTTCTTAGAGAGCTTGCTAATCAGAAGAAATGGAAAAGGTGTCCTAGATGTAAATTCTATGTTGAGAAAAGGGATGGTTGTTTGCATATGACTTGCAGGTGCAAGTTTCAGTTTTGCTATGCTTGTGGAGAAAAATGGACAACTACTCATGAATTGAAACCAACAGCTAAAAGTAGTAACAATATTGCCATCTTCTGGGAATTAAAGATGTGTGTACCTGTGTGCCAATATCTGGTGTTATAA | 1074 | 0.4115 | MASSSSSFLGIDDTVDDFYFSVVSDDEINPDLPVTDDKYAEALQFQETLLASLITSHRIPSSSMSPPPSFPCVASSSQTVHEELLFEETLIMASSSSTLPPPFVASSSKAIDDTVLTEKEADESSIVICEICTEAKRTNEMFRNQRCYHSFCCECVVKQVSTKIQDNITNVSCPGLNCKGFLELESCRSLLPKELIDRWDDALSEALLLTVPKFYCPFKDCSAMLLTENEGVGDIRESECPFCHRLFCARCHVTWHPGVGCEEYQKMNPDERGREDLLLRELANQKKWKRCPRCKFYVEKRDGCLHMTCRCKFQFCYACGEKWTTTHELKPTAKSSNNIAIFWELKMCVPVCQYLVL | 357 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g05471 | 357 | SUPERFAMILY | RING/U-box | 123 | 206 | - | - | |
Trre2g05471 | 357 | SUPERFAMILY | RING/U-box | 272 | 329 | - | - | |
Trre2g05471 | 357 | ProSitePatterns | Zinc finger RING-type signature. | 147 | 156 | IPR017907 | - | |
Trre2g05471 | 357 | ProSiteProfiles | TRIAD supradomain profile. | 125 | 340 | IPR044066 | - | |
Trre2g05471 | 357 | SUPERFAMILY | RING/U-box | 201 | 266 | - | - | |
Trre2g05471 | 357 | SMART | ibrneu5 | 271 | 329 | IPR002867 | GO:0008270 | |
Trre2g05471 | 357 | SMART | ibrneu5 | 197 | 261 | IPR002867 | GO:0008270 | |
Trre2g05471 | 357 | Pfam | IBR domain, a half RING-finger domain | 279 | 327 | IPR002867 | GO:0008270 | |
Trre2g05471 | 357 | Pfam | IBR domain, a half RING-finger domain | 213 | 261 | IPR002867 | GO:0008270 | |
Trre2g05471 | 357 | CDD | Rcat_RBR_unk | 287 | 323 | - | - | |
Trre2g05471 | 357 | FunFam | RBR-type E3 ubiquitin transferase | 124 | 210 | - | - | |
Trre2g05471 | 357 | FunFam | RBR-type E3 ubiquitin transferase | 263 | 334 | - | - | |
Trre2g05471 | 357 | CDD | BRcat_RBR_unk | 212 | 264 | - | - | |
Trre2g05471 | 357 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 207 | IPR013083 | - | |
Trre2g05471 | 357 | Gene3D | - | 258 | 340 | - | - | |
Trre2g05471 | 357 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 77 | 325 | IPR031127 | GO:0004842|GO:0016567 | |
Trre2g05471 | 357 | ProSiteProfiles | Zinc finger RING-type profile. | 129 | 174 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g05471 | Trre-Chr2 | 61262755 | 61265745 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g05471 | 129 | 320 | C3H Transcription Factor Family | AT2G19610 | 30.348 | 1.09e-21 | 93.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g05471 | K11975 | - | cave:132186566 | 347.436 |