Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05470 ATGGCGCAACAAATATCATCATCTTCTTCCTCACTCCTTTGTCTCGACACCGTAGACGATTTTTACTTCTCTGTTGTCTCCGACGATGAAACCGATCCTAACGTCCCCGTTTCCGATGACAAGTACGCTGAAGCATTACAGTTTCAAGAAACCTTATTGTCATCTCTCATCATTTCTCAACAAAACCCCTTTTCTTCTTCTTCGTCATCGTTGCCTTGCGTGGCTTCTTCCTCCACGTTACCACCGTCATTGCTCTGTGTAGCATCTTCATCAAAGACTATTCATGTTGACACTGTCCACATTGAAGAAGAAGAAGAAGAAGCAGATGATGAATCGTCTTCGATGATCATTTGTGAGATTTGTGCTGAACCAAAAACAACTGATGAAATGTTTAGGAATCAACTATGTTACCATTCATTTTGTACTGAATGTGTTGTCAAACAAGTGGCAACAAAAATTCAAGACAACATAACAAATGTGTCTTGTCCTGGTTTGAATTGTAAGGGTTTATTAGAGCTTGAATCTTGTAGATCATTGCTTCCTAAAGAATTGATTGATAGATGGGATGATGCATTGTGTGAAGCTCTTTTACTAACTGTTCCTAAATTTTACTGTCCTTTTAAGGATTGTTCTGCAATGTTGCTTGATGAAAATGAAGGGGTGGAAGATATTAGGGAATCTGAGTGTCCTTTTTGTCATAGATTGTTTTGTGCAAGGTGTCATGTTAATTGGCATCCTGGGATTGGCTGCGAGGAGTATCAGAAATTGAATGCGGATGAAAGAGGGAGGGAAGATCTTCTTGTTAGAGAACTCGCTAATCAGAAGAAATGGAAAAGGTGTCCTAGATGCAGATACTATGTTGAGAAAAGGGATGGCTGTTTGCATATCACTTGCAGGTGCAAATTTGAGTTTTGCTATGCTTGCGGAGAAACATGGACAACTACTCATGGTGGGTGCCAAAGAAATTAG 969 0.3983 MAQQISSSSSSLLCLDTVDDFYFSVVSDDETDPNVPVSDDKYAEALQFQETLLSSLIISQQNPFSSSSSSLPCVASSSTLPPSLLCVASSSKTIHVDTVHIEEEEEEADDESSSMIICEICAEPKTTDEMFRNQLCYHSFCTECVVKQVATKIQDNITNVSCPGLNCKGLLELESCRSLLPKELIDRWDDALCEALLLTVPKFYCPFKDCSAMLLDENEGVEDIRESECPFCHRLFCARCHVNWHPGIGCEEYQKLNADERGREDLLVRELANQKKWKRCPRCRYYVEKRDGCLHITCRCKFEFCYACGETWTTTHGGCQRN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05470 322 FunFam RBR-type E3 ubiquitin transferase 252 322 - -
Trre2g05470 322 ProSiteProfiles Zinc finger RING-type profile. 118 163 IPR001841 -
Trre2g05470 322 SUPERFAMILY RING/U-box 190 255 - -
Trre2g05470 322 Pfam IBR domain, a half RING-finger domain 202 250 IPR002867 GO:0008270
Trre2g05470 322 Pfam IBR domain, a half RING-finger domain 269 319 IPR002867 GO:0008270
Trre2g05470 322 SUPERFAMILY RING/U-box 261 320 - -
Trre2g05470 322 ProSitePatterns Zinc finger RING-type signature. 136 145 IPR017907 -
Trre2g05470 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 196 IPR013083 -
Trre2g05470 322 FunFam RBR-type E3 ubiquitin transferase 113 199 - -
Trre2g05470 322 Gene3D - 248 322 - -
Trre2g05470 322 ProSiteProfiles TRIAD supradomain profile. 114 322 IPR044066 -
Trre2g05470 322 CDD Rcat_RBR_unk 276 312 - -
Trre2g05470 322 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 70 312 IPR031127 GO:0004842|GO:0016567
Trre2g05470 322 SUPERFAMILY RING/U-box 113 195 - -
Trre2g05470 322 SMART ibrneu5 260 319 IPR002867 GO:0008270
Trre2g05470 322 SMART ibrneu5 186 250 IPR002867 GO:0008270
Trre2g05470 322 CDD BRcat_RBR_unk 201 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05470 Trre-Chr2 61259397 61261666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05470 107 309 C3H Transcription Factor Family AT2G19610 29.384 1.70e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05470 K11975 - msyl:126634144 363.229