Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05469 ATGGAGCAACAACAAGATATTGTCCCCTATATCTCTGATGATGATGACAACTATGCTGAACAGTTACAACTCAAACAAACCCTTATGGACTCACTCATCACTTCTAATTCTCATTCCCAAAATGCCCCCTCATCCTCTTCATCTGGACAATGGAAGCTTATGACCAAAGAAGAATCGTCTTCTTCAATCATCATTTGTGAGATTTGTGCAGAACAAAAAAATACTGAGGATATGTTTAACATTCAGACATGTTACCATTCATTTTGTTCTGAATGTGTTATCAAACAAGTGACAACAAAAATCCAAGACAAAATATCAATTGTGTCTTGTCCTGGTTTGAATTGCAAGGGTTTGTTGGAGCTTGAATCTTGCAGGTCATTGCTTCCCAAAGAATTGATTGATAAGTGGTATGATTCATTGTGTGAGTCTCTTTTTGTTACAGTTCCTAAATTCTATTGTCCTTTTAAGGATTGTTCTGCTATGTTGTTGGATGAGAATGAAGGAGGAGAAGAAGAAGATATTAGGGAATCTGAGTGCCCTTTTTGTCATAGATTGTTTTGTGCAAGGTGTCATGTCCCTTGGCATCCTGGGATTGGTTGTGAGGAATATCAGAAATTGACTTTGGATGAGAGAGGGAGTGAAGATCTTCTTGTTAGAGAACTTGCTAATCAGAAACAATGGAGAAGGTGTCCTAAATGCAAATTCTATGTTGAAAAAAATGAAGGTTGTTTACATATCACTTGCAGGTGCCGGTTTGAGTTTTGTTATGCTTGTGGAGAACAATGGAGTTCTACTCATGGTGGTTGCCAAACAGATTAG 819 0.3773 MEQQQDIVPYISDDDDNYAEQLQLKQTLMDSLITSNSHSQNAPSSSSSGQWKLMTKEESSSSIIICEICAEQKNTEDMFNIQTCYHSFCSECVIKQVTTKIQDKISIVSCPGLNCKGLLELESCRSLLPKELIDKWYDSLCESLFVTVPKFYCPFKDCSAMLLDENEGGEEEDIRESECPFCHRLFCARCHVPWHPGIGCEEYQKLTLDERGSEDLLVRELANQKQWRRCPKCKFYVEKNEGCLHITCRCRFEFCYACGEQWSSTHGGCQTD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05469 272 Pfam IBR domain, a half RING-finger domain 219 269 IPR002867 GO:0008270
Trre2g05469 272 Pfam IBR domain, a half RING-finger domain 151 200 IPR002867 GO:0008270
Trre2g05469 272 FunFam RBR-type E3 ubiquitin transferase 202 272 - -
Trre2g05469 272 SMART ibrneu5 210 269 IPR002867 GO:0008270
Trre2g05469 272 SMART ibrneu5 134 200 IPR002867 GO:0008270
Trre2g05469 272 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 39 263 IPR031127 GO:0004842|GO:0016567
Trre2g05469 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 145 IPR013083 -
Trre2g05469 272 CDD Rcat_RBR_unk 226 262 - -
Trre2g05469 272 SUPERFAMILY RING/U-box 144 205 - -
Trre2g05469 272 Gene3D - 197 272 - -
Trre2g05469 272 ProSiteProfiles Zinc finger RING-type profile. 66 111 IPR001841 -
Trre2g05469 272 FunFam RBR-type E3 ubiquitin transferase 61 147 - -
Trre2g05469 272 ProSiteProfiles TRIAD supradomain profile. 62 272 IPR044066 -
Trre2g05469 272 ProSitePatterns Zinc finger RING-type signature. 84 93 IPR017907 -
Trre2g05469 272 CDD BRcat_RBR_unk 149 203 - -
Trre2g05469 272 SUPERFAMILY RING/U-box 211 269 - -
Trre2g05469 272 SUPERFAMILY RING/U-box 61 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05469 Trre-Chr2 61254435 61255569 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05469 66 259 C3H Transcription Factor Family AT2G19610 28.571 5.24e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05469 K11975 - cave:132186565 325.094