Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g05468 | ATGTCTCATGATGATGAAGACTATGCTGAAGCGTTACAGTTACAACAAACTCTTGCTGACTCACTCATCACCTCCACGCCGCCGCCGCCGCCGCCGCAACCGTCGCCGTCGTTACTCTGCGTCGCATCTTCTTCATCAAAACCTGTTGATGTTTCCATTATCCTCAACATAGAACAGATAAAACTCGAGACAAAAGAAGAATCAAATGAATCATCTTCTTCTTCTTCAATCATCATTTGCGAGATTTGCGCAGAAACAAAAAAGACTGAAGAGATGTTTAACAATCAGAACTGTTCACATTCCTTTTGTTCTGAATGTGTTATCAAACAAGTGGAAACAAAAATCAATGAAAAAATAGCAAATGTTTCTTGTCCTGGTTTGAATTGCAAAGGTGTAATTGAACTTGAATCTTGCATTTCATTGCTTCCTAAAGAATTGTTTGATAAGTGGAATGATGCATTGTGTGAAGCACTTTTTTGTTCTGTTCCTAAATTTTACTGTCCTTTTAAGGATTGTTCTGCAATGTTGCTTGATGAAAACGAAGGTGTGGAAGATATTAGAGAATCTGAGTGTCCTTTTTGTCATAGGTTGTTTTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGATTGGTTGTGAGGAGTATCAGAAATTGAATGTGGATGAAAGAGGGAGTGATGATTTTGTTGTTAGAGAGCTTGCTAATCAGAAAAAATGGAGAAGGTGTCCTACATGTAAATTCTATGTTGAAAAAAATGGAGGTTGTTTGCATATTACTTGCAGGTGCCGATTCGAGTTTTGTTATGCTTGTGGAGAACAATGGAGTTCTACTCATGGTGGTTGCCAATAA | 849 | 0.3863 | MSHDDEDYAEALQLQQTLADSLITSTPPPPPPQPSPSLLCVASSSSKPVDVSIILNIEQIKLETKEESNESSSSSSIIICEICAETKKTEEMFNNQNCSHSFCSECVIKQVETKINEKIANVSCPGLNCKGVIELESCISLLPKELFDKWNDALCEALFCSVPKFYCPFKDCSAMLLDENEGVEDIRESECPFCHRLFCARCHVPWHPGIGCEEYQKLNVDERGSDDFVVRELANQKKWRRCPTCKFYVEKNGGCLHITCRCRFEFCYACGEQWSSTHGGCQ | 282 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g05468 | 282 | ProSitePatterns | Zinc finger RING-type signature. | 98 | 107 | IPR017907 | - | |
| Trre2g05468 | 282 | FunFam | RBR-type E3 ubiquitin transferase | 214 | 282 | - | - | |
| Trre2g05468 | 282 | Pfam | IBR domain, a half RING-finger domain | 154 | 212 | IPR002867 | GO:0008270 | |
| Trre2g05468 | 282 | Pfam | IBR domain, a half RING-finger domain | 232 | 281 | IPR002867 | GO:0008270 | |
| Trre2g05468 | 282 | SUPERFAMILY | RING/U-box | 75 | 161 | - | - | |
| Trre2g05468 | 282 | CDD | Rcat_RBR_unk | 238 | 274 | - | - | |
| Trre2g05468 | 282 | MobiDBLite | consensus disorder prediction | 19 | 41 | - | - | |
| Trre2g05468 | 282 | CDD | BRcat_RBR_unk | 163 | 215 | - | - | |
| Trre2g05468 | 282 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 161 | IPR013083 | - | |
| Trre2g05468 | 282 | Gene3D | - | 210 | 282 | - | - | |
| Trre2g05468 | 282 | ProSiteProfiles | Zinc finger RING-type profile. | 80 | 125 | IPR001841 | - | |
| Trre2g05468 | 282 | FunFam | RBR-type E3 ubiquitin transferase | 75 | 161 | - | - | |
| Trre2g05468 | 282 | SMART | ibrneu5 | 222 | 281 | IPR002867 | GO:0008270 | |
| Trre2g05468 | 282 | SMART | ibrneu5 | 148 | 212 | IPR002867 | GO:0008270 | |
| Trre2g05468 | 282 | Pfam | Zinc finger, C3HC4 type (RING finger) | 80 | 125 | IPR018957 | GO:0046872 | |
| Trre2g05468 | 282 | SUPERFAMILY | RING/U-box | 151 | 217 | - | - | |
| Trre2g05468 | 282 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 37 | 274 | IPR031127 | GO:0004842|GO:0016567 | |
| Trre2g05468 | 282 | SUPERFAMILY | RING/U-box | 225 | 281 | - | - | |
| Trre2g05468 | 282 | ProSiteProfiles | TRIAD supradomain profile. | 76 | 282 | IPR044066 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre2g05468 | Trre-Chr2 | 61248897 | 61249868 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre2g05468 | 80 | 271 | C3H Transcription Factor Family | AT2G19610 | 28.000 | 5.04e-19 | 84.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g05468 | K11975 | - | qsu:112001859 | 321.242 |