Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05466 ATGATTAGGCCATCATCAAAAGTCATTATCAAATTCCTCATGGTCATGCAAAAGCATGGTTATATTGGGGAGTTCGAATACGTCGATGATCACAGGGCTGGAAAAATTGTGGTTCAATTGAATGGTAGATTGAATAAATGTGGTGTTATTAGTCCTCGTTTTGATATTGGCGTCAAAGCAGTCGAAGGATGGACTGCAAGGCTGCTTCCCTCAAGACAGTTTGGATATATTGTTTTGACAACATCTGCTGGTATCATGGATCATGAAGAAGCTAGGAGAAAGAATGCTGGTGGTAAAGTGTTGGGTTTTTTCTACTAG 318 0.3994 MIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVQLNGRLNKCGVISPRFDIGVKAVEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNAGGKVLGFFY 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05466 105 Gene3D - 1 44 - -
Trre2g05466 105 ProSitePatterns Ribosomal protein S8 signature. 75 92 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre2g05466 105 FunFam 40S ribosomal protein S15a 1 44 - -
Trre2g05466 105 SUPERFAMILY Ribosomal protein S8 2 105 IPR035987 GO:0003735|GO:0005840|GO:0006412
Trre2g05466 105 FunFam 40S ribosomal protein S15a 45 105 - -
Trre2g05466 105 Gene3D - 45 105 - -
Trre2g05466 105 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 104 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre2g05466 105 Pfam Ribosomal protein S8 4 105 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05466 Trre-Chr2 61233866 61234440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05466 1 105 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 93.333 1.16e-72 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05466 K02957 - ini:109156678 209.534