Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05453 ATGGATGAAGAGAAGAAACAAAACCAACAACAACACACCAAAACACTCATTGCTGCTCTCAACTTTCTCTCTCGCGACGTTCCTCTTCCTTCTCATCTCCTCAACTCCGTTTCTTCCATTTATCATCATAACAACAATGGCGATGTAGGGAATTCTGGAGATGATTTAATAACAGATCTTGAAGATGCATTATCGGAACAGCGTACAAAATGTGCATCGGGTTTCAAGTTGGAGGAAGCGATGGAAAGCCGTCATCAAAGTCAGATTCGGCATCGGTTAAATGAGCTTGAAGAATTACCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTTTATGGACTGAAGTTAGCAGAGTTGCAGTCAAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTGAATGTGCATATCCTGACAGGAAATTGTTTGATTGGGGAATGATGAGATTGCGCCGTCCATCATATGGAGTTGGAGATCCATTTGCCATGGATGCTGATGATCGATTAAGGAAGAAGCGGGATTCTGAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAATCAAATAGAGACTACAAAAAGAAGGTTTTTTGCAGAAATACTAAATACTGTCCGCGAGATGCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTATCCAGGCATGGCATGGAAGGCAAAGACAGAGGGCAACCCGAGCAGAGAAATTGAGATTCCAAGCCTTGAAGTCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTGGTAAATTTAGGAGCAGCCGTTCAACGTCAGAAGGACTTCAAACATTCAGATGGTATTGAACCCTTGGAAGATTCTGAAGCTGATTTACCCGAGTTAGATGCTTCAAAGAATGGAATTTCTAAGGAATCACCTGTTGATGAAGATATAGATGCCATAGATTCTGATCATAATGATGGGGATTCTAATGATTTACTTGAAGGTCAGCGACAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCGTCTATACTTCAAGGTGGAGAATTAAGATCATATCAGATAGAGGGGCTCCAATGGATGCTTTCCTTGTTTAATAACAACTTAAATGGGATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATACAAACAATTTCTCTCATAGCACATCTTTTTGAATACAAAGGTGTGACTGGCCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAACTGGATTATTGAATTCTCATCGTGGGCTCCTAGCATTAAAACTATTCTTTATGATGGACGGATGGATGAGAGAAAAGCAATAAAGGAAGAATATTCAGGAGAGGGGAAATTTAATGTTATGATTACACATTATGATCTTATAATGAGAGACAAAGCGTTTCTGAAGAAAATTAAATGGAACTACTTAATTGTGGATGAAGGTCATCGGTTGAAGAATCATGAGTCTGTTCTAGCAAAAACATTGGATAATAGCTATAACATCCAACGGAGACTTTTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAACTATGGTCCCTGCTTAATTTTCTCCTTCCGAACATTTTTAACTCCGTTCAAAATTTCGAGGACTGGTTCAATGCCCCCTTTGCAGACCGAGTTGATGTCTCTCTATCAGATGAAGAACAGCTATTAATCATTCGGCGTCTGCATCAAGTAATTAGGCCCTTCATATTAAGAAGGAAAAAGAATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTTTATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTAGACAACGGTTCTGGAAAATCGAAAAGTCTACAGAACTTAACGATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAGATGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTTGAAGTTTATTTAAGACTTCATGACTTTAAGTATCTTAGACTTGATGGCTCAACGAAAACTGAAGAAAGGGGCACTCTACTACGGAAATTTAATGCCCCCGACTCCCCATACTTTATGTTTCTCTTAAGCACCCGGGCAGGTGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGAATTGGACAAAAAAAGGAAGTTCGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGTATAGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACGTCAACAGCCCAGGACAGACGAGAAATGTTGGAGGTGATTATGCGTCGAGGTTCAAGCTCACTTGGGGCAGATGTGCCTAGTGAAAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGTTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAACTACAAATCACGTCTCATGGAAGAGCGTGAATTGCCAGATTGGGTGTATGCTCCAATTCAAAAGGATGACAAGTCCAAAAACTTCAACAGTGGTGTTACTGGAAAGCGGAAAAGAAAAGATGTGGTATATGCTGATACATTGAGTGAATTACAGTGGATGAAAGCTATGGAGAATGGGGAGGATGTGTCAAAGCTTTCAGCTAAAGGGAAAAGAAGAGATTACCTCCCATCTGACAGCATAGCACGAGCCAGCGATGATACAGGGGCAGTCGAAAGCTTATTAGGGCCAAGGACTAAAATTGCCCCCATGGCAAATGAGAGAACGAGTGAAGACAGTTTCCATGTTACTCCTTCCTTAAAGAGATTCAAGCCTGACGGAACAAATTTCCAGAAACATGCATACGAAGATGTCAGCGGAAGTGGTTTGAACCAGAATGTTTTCTCCTGGAATACTCACAAAAAGAAGAGATCAAGCCATCCTGGCCAGGGTTCATTATCCGATAGCAGAGGGCAGAGTTCCAATGGAAGAGCAAACTGGAACTGA 3249 0.4137 MDEEKKQNQQQHTKTLIAALNFLSRDVPLPSHLLNSVSSIYHHNNNGDVGNSGDDLITDLEDALSEQRTKCASGFKLEEAMESRHQSQIRHRLNELEELPSSRGEDLQTKCLLELYGLKLAELQSKVRSDVSSEYWLNVECAYPDRKLFDWGMMRLRRPSYGVGDPFAMDADDRLRKKRDSERLSRLEEVEKNQIETTKRRFFAEILNTVREMQLQIQASLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDFKHSDGIEPLEDSEADLPELDASKNGISKESPVDEDIDAIDSDHNDGDSNDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLFEYKGVTGPHLIVAPKAVLPNWIIEFSSWAPSIKTILYDGRMDERKAIKEEYSGEGKFNVMITHYDLIMRDKAFLKKIKWNYLIVDEGHRLKNHESVLAKTLDNSYNIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYRCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGTLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEVIMRRGSSSLGADVPSEREINRLAARSDEEFWLFEKMDEERRQKENYKSRLMEERELPDWVYAPIQKDDKSKNFNSGVTGKRKRKDVVYADTLSELQWMKAMENGEDVSKLSAKGKRRDYLPSDSIARASDDTGAVESLLGPRTKIAPMANERTSEDSFHVTPSLKRFKPDGTNFQKHAYEDVSGSGLNQNVFSWNTHKKKRSSHPGQGSLSDSRGQSSNGRANWN 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05453 1082 Gene3D - 369 612 IPR038718 -
Trre2g05453 1082 MobiDBLite consensus disorder prediction 1063 1082 - -
Trre2g05453 1082 Coils Coil 890 913 - -
Trre2g05453 1082 SMART helicmild6 718 802 IPR001650 -
Trre2g05453 1082 MobiDBLite consensus disorder prediction 300 349 - -
Trre2g05453 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Trre2g05453 1082 Pfam SNF2-related domain 381 669 IPR000330 GO:0005524|GO:0140658
Trre2g05453 1082 FunFam Probable ATP-dependent DNA helicase CHR12 609 908 - -
Trre2g05453 1082 MobiDBLite consensus disorder prediction 1042 1082 - -
Trre2g05453 1082 SMART SnAC_2 895 955 IPR029295 GO:0042393
Trre2g05453 1082 MobiDBLite consensus disorder prediction 988 1028 - -
Trre2g05453 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 859 IPR027417 -
Trre2g05453 1082 FunFam Chromatin structure-remodeling complex protein SYD 369 612 - -
Trre2g05453 1082 Pfam Helicase conserved C-terminal domain 689 802 IPR001650 -
Trre2g05453 1082 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 390 556 IPR014001 -
Trre2g05453 1082 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 692 853 IPR001650 -
Trre2g05453 1082 SMART ultradead3 374 567 IPR014001 -
Trre2g05453 1082 Pfam Snf2-ATP coupling, chromatin remodelling complex 896 955 IPR029295 GO:0042393
Trre2g05453 1082 Gene3D - 613 833 IPR027417 -
Trre2g05453 1082 CDD SF2_C_SNF 680 813 - -
Trre2g05453 1082 PANTHER SNF2/RAD54 HELICASE FAMILY 81 960 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05453 Trre-Chr2 61124183 61134120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05453 685 860 RAD5 or RAD16-like Gene Family AT5G43530 33.708 8.61e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre2g05453 SNF2_N 6.9e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05453 - - gmx:100786280 1870.13