Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05450 ATGAGTAGATCAAGAAGAGTAGATGCATTGATTTGTGAATCATATTCATTTTTATTGGAAGTAAGAGAAGTGTTTCAAGATAAGAGGGAAAAGTATCAACAATTTTTACAACTCATGATTGATTTCAAGGACAGAACAGTTGATACTGAAGGTGTGAAAGAAGGAGTGATGGAGTTGTTTAAAGATCACATTCATTTAATTTCGAGATTCAACATTTTCTTACCACCGGGACATAAAATCCCGCTTCCATCGGATAATGAACAACAACATGAAGACGAATCCGCGATCAAAGATGAACAGAAAGATGATGAAGAATAA 318 0.3428 MSRSRRVDALICESYSFLLEVREVFQDKREKYQQFLQLMIDFKDRTVDTEGVKEGVMELFKDHIHLISRFNIFLPPGHKIPLPSDNEQQHEDESAIKDEQKDDEE 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05450 105 MobiDBLite consensus disorder prediction 79 105 - -
Trre2g05450 105 Gene3D Paired amphipathic helix 14 75 IPR036600 GO:0006355
Trre2g05450 105 SUPERFAMILY PAH2 domain 11 76 IPR036600 GO:0006355
Trre2g05450 105 FunFam Paired amphipathic helix protein Sin3 13 75 - -
Trre2g05450 105 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Trre2g05450 105 PANTHER SIN3B-RELATED 15 96 IPR039774 GO:0003714
Trre2g05450 105 ProSiteProfiles PAH domain profile. 3 77 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05450 Trre-Chr2 61115161 61115478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05450 13 86 WRKY Transcription Factor Family AT4G12020 37.333 1.49e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre2g05450 PAH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05450 K11644 - mtr:11416202 120.553