Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g05450 | ATGAGTAGATCAAGAAGAGTAGATGCATTGATTTGTGAATCATATTCATTTTTATTGGAAGTAAGAGAAGTGTTTCAAGATAAGAGGGAAAAGTATCAACAATTTTTACAACTCATGATTGATTTCAAGGACAGAACAGTTGATACTGAAGGTGTGAAAGAAGGAGTGATGGAGTTGTTTAAAGATCACATTCATTTAATTTCGAGATTCAACATTTTCTTACCACCGGGACATAAAATCCCGCTTCCATCGGATAATGAACAACAACATGAAGACGAATCCGCGATCAAAGATGAACAGAAAGATGATGAAGAATAA | 318 | 0.3428 | MSRSRRVDALICESYSFLLEVREVFQDKREKYQQFLQLMIDFKDRTVDTEGVKEGVMELFKDHIHLISRFNIFLPPGHKIPLPSDNEQQHEDESAIKDEQKDDEE | 105 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g05450 | 105 | MobiDBLite | consensus disorder prediction | 79 | 105 | - | - | |
Trre2g05450 | 105 | Gene3D | Paired amphipathic helix | 14 | 75 | IPR036600 | GO:0006355 | |
Trre2g05450 | 105 | SUPERFAMILY | PAH2 domain | 11 | 76 | IPR036600 | GO:0006355 | |
Trre2g05450 | 105 | FunFam | Paired amphipathic helix protein Sin3 | 13 | 75 | - | - | |
Trre2g05450 | 105 | Pfam | Paired amphipathic helix repeat | 30 | 74 | IPR003822 | GO:0006355 | |
Trre2g05450 | 105 | PANTHER | SIN3B-RELATED | 15 | 96 | IPR039774 | GO:0003714 | |
Trre2g05450 | 105 | ProSiteProfiles | PAH domain profile. | 3 | 77 | IPR003822 | GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g05450 | Trre-Chr2 | 61115161 | 61115478 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g05450 | 13 | 86 | WRKY Transcription Factor Family | AT4G12020 | 37.333 | 1.49e-07 | 46.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Trre2g05450 | PAH | 2.8e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g05450 | K11644 | - | mtr:11416202 | 120.553 |