Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05448 ATGAACAACACTAGCAACCCCTCGTTCGATGATGCAATAAAGTACGTTAATGAGGTGAAAGATGCCTTTCGTGACGAGAAGCATATATACCGGGCATTCTTAAGGCTCCTGGAGGATTTCAAATCCCAAAGGAAAAACATAGAAATTGTGAAGGAAGAAATAGCAGAAATATTCCAAGACCGTAAAGATTTAATTTCAGGATTCAACTACTTCTTGCCAGCAAGACATGAAAATATATTGGCACTTCCATCGCATGATGAACAACAAGGTGATGATAAATCAGCTTTCAAAGACGATTAG 300 0.3833 MNNTSNPSFDDAIKYVNEVKDAFRDEKHIYRAFLRLLEDFKSQRKNIEIVKEEIAEIFQDRKDLISGFNYFLPARHENILALPSHDEQQGDDKSAFKDD 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05448 99 ProSiteProfiles PAH domain profile. 5 75 IPR003822 GO:0006355
Trre2g05448 99 SUPERFAMILY PAH2 domain 5 73 IPR036600 GO:0006355
Trre2g05448 99 Gene3D Paired amphipathic helix 11 73 IPR036600 GO:0006355
Trre2g05448 99 PANTHER SIN3B-RELATED 10 79 IPR039774 GO:0003714
Trre2g05448 99 FunFam Paired amphipathic helix protein Sin3 11 73 - -
Trre2g05448 99 Pfam Paired amphipathic helix repeat 28 72 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05448 Trre-Chr2 61102274 61102573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05448 11 86 WRKY Transcription Factor Family AT4G12020 35.526 6.50e-08 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre2g05448 PAH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05448 - K11644 ahf:112791856 81.6481