Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05446 ATGATCCATCTAAAACAAATGTTGCAGCACTTCAAAATCTTCACCACTGCCTATGTTTTCCTTTGCACACTAATTATATCCACAAAAACAACTCATGCAGCTACAGACCAATCCTTTATTGTACATTACTGTCCAAACACAAACACTTTTTCTCCAAACGCAACCTACCAAACAAACCTCAACAAACTTCTTTCTATTCTCTCATCAAATTCCACCAACAAAAGTGGCTTCTACTACACCACAGTCGGCGAAAACAACCCGATAAACACTATATACGGTGCATTTCTCTGCCGTGGAGATCTCACACAAAATGAATGCAAAGACTGTGTTTCCACAGCATCCAAACAAATCCTTCAAGACTGTCCTCAATCAAAAGAATCAGTTATTTGGTTAGCTGAATGCATGATACGTTACTCAAACGTTTCATTCTTCAACGTAGCTGCAGAAGTTCCTGTGCGTGCTCTCCTGAACATTGGTACTGTGATGGATCAGAACCGGTTCATGCAACTTTTAGCGGATACAATGAATTCCGCGGTGTTAGAGGCGGTGAATGGTGGTGGTGATAAGAAGTTTGCAACCAAAGAAGCAAATGTTTCTAGCTTTCAAACTTTGTATACACTTGCACAGTGTACACCGGATTTGTCAGAGTCAGGCTGCGAAAAATGCCTTAAAATAGCAACTAATCAATTACCATCTTGCTGTAGTGGAAAACAAGGCGGAAGAGTGCTTATTCCAAGTTGTAATATTAGGTATGAGGTTTATCCGTTTTATCACGAGTTGAATGTGCCTGCTCCAAATGAACCAAGGCCGAGTCCACAAGGAAAAAAATCCCGGAACTCAGTAGTGATAATTGTTGCAATTGTAGTTCCTATTGTGGTTACTTTGCTGCTTACATTGTTTGTCTGTTGGATCATATCTGAAAGGAAAAGAAGAAAGTTCGATTCAGTGCCTCAAGAAAGTGTTGAAATCTCCAGAGTAGAGTTCTTGCAATTTGATTTTGATACTATCGAAGCGGCCACAAACAACTTCTGTGATGACAATAAATTGGGGGAAGGAGGATTTGGCGAGGTTTACAAGGGTAAGCTATTTAATGGACAAGAGATTGCTGTGAAGAGGCTATCAAGAGGTTCTAGTCAAGGCACAGAAGAATTCAAGAATGAGGTGGTTTTGGTAGCTAAACTACAACACAGAAATCTTGTTAGGATTCTTGGTTTTTGCTTGGATGGTGAAGAAAAAATGCTTATTTATGAGTTCATGCCCAACAAAAGTCTTGACTATTTTCTATTTGATCCTGACAAAGCACAGCAGATTAATTGGCCAAGACGATACAAGATAATAGAAGGAATTGCACGAGGAATGCTTTATCTTCATGAAGATTCACGACTTAGAATCATACATCGTGACCTTAAAGCTAGTAATATATTACTAGATGAGTATTTAAATCCTAAAATTTCAGATTTTGGGATGGCAAGAATTTTTGGTGTTGATCAAACCCGAGGAATCACAAGGAGAGTTGTCGGAACACTAGGTTACATGTCTCCAGAGTATGCAATGCATGGAGAGTTTTCTATCAAAACAGACGTGTATAGCTTCGGTGTCCTTGTTCTCGAAATAATTACCGGAAAGAAGATAACATCCTTCCGCGAATCAGGCTATGCTGAGGACCTCTTGAGCTATGCTTGGAAAAAATGGAATGAAGGGACACCATTGGAGTTACTAGACACAACATTAAGAGATTCATACTCAAGTGTTGAAGTAATAAGATGCATCCATGTTGGGTTATGTTGTATTCAAGAAGATCCAAATCAAAGACCATCCATGCAGACAATAGTTCTACTGCTAAGTAGCCATTCAGTAACTCTTGAACAACCTCAAAGACCAGCAGGTTATTTTAATAGCAAAACTGATCAAAGCATTTCAAGAATAGATTTTGAGAATTCAGACATGTCTACAAATACAAGCCATTTATCAGTCCCAGTTTCTGTTGATGATGCATCAATCACTCAGGTGTACCCTCGGTAG 2022 0.3912 MIHLKQMLQHFKIFTTAYVFLCTLIISTKTTHAATDQSFIVHYCPNTNTFSPNATYQTNLNKLLSILSSNSTNKSGFYYTTVGENNPINTIYGAFLCRGDLTQNECKDCVSTASKQILQDCPQSKESVIWLAECMIRYSNVSFFNVAAEVPVRALLNIGTVMDQNRFMQLLADTMNSAVLEAVNGGGDKKFATKEANVSSFQTLYTLAQCTPDLSESGCEKCLKIATNQLPSCCSGKQGGRVLIPSCNIRYEVYPFYHELNVPAPNEPRPSPQGKKSRNSVVIIVAIVVPIVVTLLLTLFVCWIISERKRRKFDSVPQESVEISRVEFLQFDFDTIEAATNNFCDDNKLGEGGFGEVYKGKLFNGQEIAVKRLSRGSSQGTEEFKNEVVLVAKLQHRNLVRILGFCLDGEEKMLIYEFMPNKSLDYFLFDPDKAQQINWPRRYKIIEGIARGMLYLHEDSRLRIIHRDLKASNILLDEYLNPKISDFGMARIFGVDQTRGITRRVVGTLGYMSPEYAMHGEFSIKTDVYSFGVLVLEIITGKKITSFRESGYAEDLLSYAWKKWNEGTPLELLDTTLRDSYSSVEVIRCIHVGLCCIQEDPNQRPSMQTIVLLLSSHSVTLEQPQRPAGYFNSKTDQSISRIDFENSDMSTNTSHLSVPVSVDDASITQVYPR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05446 673 Gene3D Transferase(Phosphotransferase) domain 1 419 629 - -
Trre2g05446 673 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 669 - -
Trre2g05446 673 SUPERFAMILY Protein kinase-like (PK-like) 328 646 IPR011009 -
Trre2g05446 673 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Trre2g05446 673 ProSiteProfiles Gnk2-homologous domain profile. 38 143 IPR002902 -
Trre2g05446 673 Pfam Protein tyrosine and serine/threonine kinase 347 612 IPR001245 GO:0004672|GO:0006468
Trre2g05446 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Trre2g05446 673 CDD STKc_IRAK 349 611 - -
Trre2g05446 673 Gene3D Phosphorylase Kinase; domain 1 304 418 - -
Trre2g05446 673 FunFam Cysteine-rich receptor-like protein kinase 25 151 256 - -
Trre2g05446 673 FunFam Cysteine-rich receptor-like protein kinase 10 306 418 - -
Trre2g05446 673 Pfam Salt stress response/antifungal 164 253 IPR002902 -
Trre2g05446 673 Pfam Salt stress response/antifungal 44 140 IPR002902 -
Trre2g05446 673 ProSiteProfiles Protein kinase domain profile. 343 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05446 673 Gene3D - 35 143 IPR038408 -
Trre2g05446 673 Gene3D - 151 256 IPR038408 -
Trre2g05446 673 ProSiteProfiles Gnk2-homologous domain profile. 149 256 IPR002902 -
Trre2g05446 673 SMART serkin_6 343 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05446 673 FunFam cysteine-rich receptor-like protein kinase 10 419 621 - -
Trre2g05446 673 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 37 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05446 Trre-Chr2 61092307 61095624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05446 7 673 Receptor kinase-like Gene Family AT4G05200 51.533 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g05446 PK_Tyr_Ser-Thr 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05446 - - cit:127900229 744.577