Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05422 ATGAAAGACAGAACTAGAACAAGCACAAATGTTAGAGGGACAATGGGATATTTGGCACCAGAATGGCTTAAAAATGCACCTATCACTGCAAAAGTGGATATCTATAGTTTTGGTTTCATGTTGCTAGAAATCTTATTTTGCAGAAGGCACATTGAGTTACATCAGATTGAAGATGGAACAGAAGGTGGAGATGACATGATACTTATAGATTGGATTCTATATTGGACAAAAGAAGGGAGACTAAGAGACATTGTTAGCCATGATGATGTTGATGTTTTTAATGATTTCAATAGGTTTAAGAGAATGACTATGGTTGGACTGTGGTGTCTGTGTCCTAATCCAACTATTAGGCCATCTATTACCAATGTTTTACAGATGTTAGAAGGAGATATAGAAGTTGGTGTTCCACCATTGTTTGATGGACAAACTTGGTAA 435 0.3632 MKDRTRTSTNVRGTMGYLAPEWLKNAPITAKVDIYSFGFMLLEILFCRRHIELHQIEDGTEGGDDMILIDWILYWTKEGRLRDIVSHDDVDVFNDFNRFKRMTMVGLWCLCPNPTIRPSITNVLQMLEGDIEVGVPPLFDGQTW 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05422 144 Pfam Protein kinase domain 7 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05422 144 SUPERFAMILY Protein kinase-like (PK-like) 6 132 IPR011009 -
Trre2g05422 144 Gene3D Transferase(Phosphotransferase) domain 1 1 133 - -
Trre2g05422 144 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 137 - -
Trre2g05422 144 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05422 Trre-Chr2 60862607 60863041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05422 3 138 Receptor kinase-like Gene Family AT5G03140 36.232 1.78e-22 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre2g05422 Pkinase 1.8e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05422 - - mtr:25485223 254.218