Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05421 ATGCAAATTCAAAGGTTGTTATCCAAGTGTCGCCGTCGATTTCTGTGCTGCAAATGCAAATTCATTTTGATCGTAGCGGTGTCAATATGTTCCTTACTTGCTGTTGTGTTTGCAACTATTGCTATCTATTATCATCCAACATTTTGTTATATCCTGAAGAAAGAGACGCCGCCAAAGCCAAAGCCTGTGGACATCAACTTAAAGGCGTTTTCGTTCCAAGAGTTGCGAGAAGCGACGAATGGATTCAGAAACGAACTCGGCCGTGGTGGTTTTGGTACGGTTTATAGCGGTGTTTTGAACTTGGAGGGTGAACAGGTTGAGGTTGCTGTGAAAAAACTTGAAAATGTAGAGGAAAAAGGCGAAAAGGAGTTTGTTAATGAAGTTCAAGTAATTGGTATGACACATCACAAGAATCTTGTGAGGTTGTTAGGTTTTTGTAACGAGGAGAATCATCGCCTTCTGGTTTATGAAATGATAAAAAATGGGACATTATCAAGTTTAATTTTTGAGGAGGGTGATAAAGATAAACCAAGTTGGTATCATAGAGCTAAAATTGTTCTTGAAATTGCTAGAGGCTTGATGTATCTGCATGAAGAGTGTGACCCTCAGATTATCCACTGCAACATAAAGCCGCAGAATGTTTTTCTCGACTGA 654 0.396 MQIQRLLSKCRRRFLCCKCKFILIVAVSICSLLAVVFATIAIYYHPTFCYILKKETPPKPKPVDINLKAFSFQELREATNGFRNELGRGGFGTVYSGVLNLEGEQVEVAVKKLENVEEKGEKEFVNEVQVIGMTHHKNLVRLLGFCNEENHRLLVYEMIKNGTLSSLIFEEGDKDKPSWYHRAKIVLEIARGLMYLHEECDPQIIHCNIKPQNVFLD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05421 217 Gene3D Phosphorylase Kinase; domain 1 54 158 - -
Trre2g05421 217 ProSiteProfiles Protein kinase domain profile. 80 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05421 217 Pfam Protein kinase domain 84 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05421 217 ProSitePatterns Protein kinases ATP-binding region signature. 86 112 IPR017441 GO:0005524
Trre2g05421 217 SUPERFAMILY Protein kinase-like (PK-like) 60 217 IPR011009 -
Trre2g05421 217 FunFam S-receptor-like serine/threonine-protein kinase 52 158 - -
Trre2g05421 217 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 21 217 - -
Trre2g05421 217 Coils Coil 99 119 - -
Trre2g05421 217 Gene3D Transferase(Phosphotransferase) domain 1 159 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05421 Trre-Chr2 60861908 60862561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05421 66 217 Receptor kinase-like Gene Family AT2G23950 44.586 1.62e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre2g05421 Pkinase 2.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05421 - - gmx:100779807 291.967