Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05408 ATGAATGCTGCTGCAAGTTTTGATGCAGAGAACTCTGAGTTTATAGAAGTTGATCCTACTGGAAGATATGGAAGATACAATGAAATTCTTGGTAAAGGAGCTTCTAAGACAGTATATAGAGCTTTTGATGAGTATGAAGGAATAGAAGTAGCATGGAATCAAGTAAAGCTTTATGACTTTTTGAAAAATCCTCAGGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTCAAGACATTGAAGCACAAGAACATCATGAAGTTTTACACTTCTTGGGTTGATACTGCTAACAGACACATTAACTTTGTCACTGAGATGTTCACATCTGGGACTCTTAGACAGTACAGACTTAAACATAAAAGAGTTAACATCAGAGCTGTTAAGCATTGGTGTAGACAGATTTTGGAAGGTCTCCTCTATCTCCATAGCCATAATCCTCCTGTGATTCATAGAGATCTCAAGTGTGATAATATTTTCATCAATGGTAACCAAGGAGAAGTCAAAATTGGTGATCTTGGCCTCGCTGCAATTCTCCGCAAATCTGATGCTGTTCATTGTGTTGGAACACCTGAATTTATGGCTCCAGAAGTGTATGAAGAAGATTACAATGAATTGGTTGACATATATTCTTTTGGAATGTGCATCTTGGAGATGGTTACCTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAAAAAGTTGTCTCTAGAAAGATGCCAGAAGCTCTTAACAGAGTAAATGACCCAGAGGTTAAGCAGTTTGTAGAGAAATGCTTGGTAACTGTATCCCTTAGACTTTCAGCTAAGGAACTCTTGGATGATCCTTTTCTCCAAATTGATGATTATGGATCTGACTTGAAAGAATTTCAGTATCTAAAAGATTGCTATGAAGTAACACCAACAATTAGACAACCTATGAATGGAAATTATAGCATTAACAGTAGCTTAATGAGTGTGTACACTGATAATCCTGGTGGTTATCAAGATGATTTTGAAACAAATGATTTTGACTTCTTTGATTGTGAAGATGATGATTTGGATGAAGTTGACACCTCAATCAAAGGTAGGAAAAGAGATGATGGCATCTTTTTGAGAATCAGAATACCAGATAAGGAAGGTCGAGTTCGAAACATCTACTTCCCATTCGACACGGAGACTGATACTGCATTCAGTGTTGCACATGAAATGGTAGCTGAGCTTGACATAACTGACCAAGATGTAACAAAATTAGCAAACATGATAGATAATGAAATTGCGAATTTAGTACCAGGATGGAAAAAGGAACCAAAAATAGATGAAATTTCAGAAGCTTCAAGTGCAAGTTTCTGCCTCAACTGTGCTGCAAACAATACCTTAGTTGATTATGTATCATCAAATAATCCATGTGCCAAGAATCTTTCATTCTTTCATTGCTCTAAAAATGGATGTGCAGCAGTTCATGGCCGGTTTGAGGAGATCACATACCAATATGAAGGGTCTGCAAACAGCACTACAGAAAATGCACCAGGTCAACCCAACGGCATTCATTATGCCGATATTTGCGCTCAGCGAGACGAACGCGAGTCAAACCATGTAGAGTTGAAAGATATACATTGTGACAAATATCATGAGGTATCAAAACTATCAACCATAAAGGAAGAGGATAGAAGTGTAAATGTGGATGACCAAAGTGATTTTAATACCAAAAATCCTCCAACTACCCCTGCAGCATCAGAACGTTTATTATTCTTGGACTATGAAAATGAAATAAGGCAAGAATTGAGATGGCTCAAAGCAAGGTACCAAATGCAGATAAGAGAGCTTAGAGACCGTCAAATAGGTAGTACTAGAACAAAATCTATTTGCACATCTCCTGAAACTTTAAAATTAGAACATGGAAAAGATGGATTTCTCAGGCTACCAGCTAAATTGTCACACATGAATATACAAAACAATAATAACTCGTTATTGAGGTCTATGGAATACTTTGGCCGACCAAATGATGAGAAATGCAACACTTTAGCCGACCAAATGATTCCAAATTATGTTTGTGAGATGAGTCAGCCTAACAATTCTAAGCAAATGGCCACAGCCAAGGATTTCTTGGCAGGAGCTTTGCTTCCAAACTCACTTCAAAGGGCAACCTCGCTTCCAGTTGATGCATTTGATGTCTAG 2166 0.3753 MNAAASFDAENSEFIEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLKNPQDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRHINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILEGLLYLHSHNPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSDAVHCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSRKMPEALNRVNDPEVKQFVEKCLVTVSLRLSAKELLDDPFLQIDDYGSDLKEFQYLKDCYEVTPTIRQPMNGNYSINSSLMSVYTDNPGGYQDDFETNDFDFFDCEDDDLDEVDTSIKGRKRDDGIFLRIRIPDKEGRVRNIYFPFDTETDTAFSVAHEMVAELDITDQDVTKLANMIDNEIANLVPGWKKEPKIDEISEASSASFCLNCAANNTLVDYVSSNNPCAKNLSFFHCSKNGCAAVHGRFEEITYQYEGSANSTTENAPGQPNGIHYADICAQRDERESNHVELKDIHCDKYHEVSKLSTIKEEDRSVNVDDQSDFNTKNPPTTPAASERLLFLDYENEIRQELRWLKARYQMQIRELRDRQIGSTRTKSICTSPETLKLEHGKDGFLRLPAKLSHMNIQNNNNSLLRSMEYFGRPNDEKCNTLADQMIPNYVCEMSQPNNSKQMATAKDFLAGALLPNSLQRATSLPVDAFDV 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05408 721 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Trre2g05408 721 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 616 - -
Trre2g05408 721 Gene3D - 365 456 - -
Trre2g05408 721 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Trre2g05408 721 Coils Coil 588 608 - -
Trre2g05408 721 CDD STKc_WNK 22 281 - -
Trre2g05408 721 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Trre2g05408 721 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Trre2g05408 721 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05408 721 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Trre2g05408 721 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Trre2g05408 721 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 368 422 IPR024678 GO:0004674|GO:0005524
Trre2g05408 721 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05408 721 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05408 Trre-Chr2 60741899 60745612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05408 1 508 MAP Kinase Kinase Kinase AT3G22420 57.117 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre2g05408 Pkinase 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05408 K08867 - gmx:100804179 1050.81