Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05405 ATGGAACCGAGTGCGAGAATCGCTAGCCCTTCTGGGGTTGTGGTTAAGAATAGAAGTTCTTCGGGGTGTTTGATTGTTAGAAAGAAAGGGGATGGTTTGGGTGCTGGAGTTGGTGGTGGTTCGAGTTCCCGGAAGCAGTATGAATCGAAGAAGGTGAGGAAAAAGCCGAAGGCAGATTCTAGTGATTCGGAATCAAGCGGGGAGTTACCGTCTGCTAGGAGGATTGGCCCTGAGACCATTCGAGTTTGTAATAGTTTGAGTGCTCTTGAGCGAGGTGGTAATGTTGGTAGTGGTGAAATAAGTAGGAAGAGGGAGAGAATGGATCAAATTAGGCGTAATGGGGATGGCATGGTTGATGGGAATGGCTTGGAGAGAAGGGATAAGAAAGTTAAGTTGGATGTGTTTGATTTTGATGAATATGATGGAGTGGGTGCTGAAAGGATGAGAAGGAGGCAATTTGATAATGATGAGGTTGGTTTAGGAGGAGGAAGGTTTATGGGAACAATGCATTCTGGTAGAGGTAGCATTGATAGGGAATTTGAAACTGGTTCAAGCAAACGCATTGTGGATAAGAGAAAAAATTCCTATTATGACAAGGCAAGTGGTTCACATCTTGGAGATAGTGCTGACCATAGTCGGATAAAGATGAAAAAGGATGGAACTCAGCGTCCTCTGCCCTTGATGAAGGAGAAGTTTAACTCTGATGAGTCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTGATGGTTAATAAGAAGAAGGTGGGTGGGTCAGCAGAACACTATGATCATCGTAAACCAGTAGAAAGCAGACAAAGTTTAAGGGCTGAGGGCACCTCTAAGAGGAATGTTCCAATCCGCCCTTCATCACACTTAGAAACAAAATCTGCCGAGAAACAGGGTTTACTTGTTAGGCCAGAGAAGAAACAAATAACAAAAAAATCCTTGTCAAGTAAGGAGGACAGTAAGGGCGATGAACAGGATTCAGACAACAATGACGCATCAATCAATCTGGAAATAAAAAATATTAAAACTCACACATCTTCAAAAAAGATAACCTCTGAAAATGAACAGACTCCCGTACATCCAACTACAAAATCGAGTGAAGGGAAAATCAGGCGAGGTAGTGGCACAGAAAAGCAGAAACTACGAGAACAAATACGTGAGATGCTTCTGAATAAAGGCTGGACCATAGATTATCGCCCACGAAGGAATAGGGACTATTTAGATGCAGTTTACATTAATCCTGCGGGAACAGCTTATTGGTCCATCATCAAGGCCTACGATGCACTTCAAAAGCAATTGATTGAGGATGATCAACAGGCCAAGGCCAAAGGGGAGGGTTCTTCTTTTGCTCCTATCGCTGATGATGTGCTCAGTCAGTTGACAAGGAAAACTCGGAAGAAGATGGAGAAAGATTTGAAGATGAAGAAGAAGAAGCAAAGAGTTGATGATGGTGATAGTGGAAAAGAACGACAGATTAAAAGAATTCCTGGCAAAAAGCTTCATATGAGTGTGATTGATAGTGATAGCAATGAAGATAAGTTAAGCTCCTTTGTCAAGCAAGGAAGTAAATCAATGAAAACAAAATTGACTGAAAATGCTGTTACCGGTGGTAGCTCTAAAAGCCAGAATGCTATAGCTGAAAAACCATTTTCTGAAAGTGATCCTCAGGTTCTACTTGGAAGGAAAAGTAGAAAACATGGACGGTGCACTTTATTAGTCCGTAGTTCTAACAAGGGATTGAATTCAGAATCTGATGACTTTGTTCCATATACGGGCAAAAGAACAGTGCTTTCCTGGTTGGTTGACTCAGGGGTAGTACAAGTTAGTCAAAAGGTTCAATATCGCAGGAGGAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGAAGGCATTCACTGTGGTTGCTGTAGTAAGATCCTCACGGTTTCAAAGTTTGAGGTTCATGCAGGAAGCAAAGTGCCGCAGCCATATCAAAACATATATTTAGACTCTGGAGTTTCCCTTCTACAATGCCAAATAGATGCGTGGGAAAAACAAGAGAATTTTGGGAAAATCAGTTTCCATTCAGTAGATGTCGATGGTAATGATCCAAATGATGATACCTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGCTGTGATGGATGTCCATCAACATTTCATCAGAGTTGCCTGGATATACAGATGCTTCCCCCAGGGGAATGGCGTTGTCCAAATTGCACCTGTAAATTTTGTGGACTGGCCAATGGAACTATTGACAAAGAAGACAATGCAACTGTATATGCCCTACGTACTTGTGTCTTATGCGAGAAAAAATATCATGACTCCTGTACTAAGGATATGGGTGTCCTTCTTGCTGACTCCAATATGTCAGGGCATTCCTTTTGTGGAAAAAGCTGCAAAGAGCTTTTTGAGCAATTGAAGAAGTACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACGTGGTGTCTTGTTCGTAGAACAGATGATGATTCCGAGGCAGCTAGTAGGGGAATCACCCAGAGGGTGGAATGCAACTCCAAGCTGGCTGTTGCACTGACTGTGATGGACGAATGCTTTTTACCTGTTGTTGATAGGAGGAGTGGGATCAATATAATCCATAATAGTTTATATAATAGCGGGTCAAACTTCAGTCGGTTGAATTATACTGGATTTTATACTGCTATTTTGGAGCGGGGTGATGAAATAATTTCTGCTGCATCTATCAGGTTCCATGGGACTAAGTTAGCAGAGATGCCATTCATTGGAACTCGCCATATATATAGGCATCAGGGAATGTGCCGCCGGCTTTTTTCTGCCATTGAACTTGCACTTTGCTCTTTGAAGGTTGAGAAACTGGTTATTCCTGCAATTTCTGAACTTGTTCTTACGTGGACAACAGTATTTGGCTTCACACATCTTGAGGAACCACTCAGGCAAGAAATGCGGTCATTGAATATGTTGGTGTTCCCTGGTATTGATATGTTACAGAAGCTTCTAGCGGAGCAAGGAAAACTTGAGGATGCCGAGCAATTTGAGAATGAAGATGTTTCAATCAAGCCCGCTGTGGTCAATAGGTTAGATATCAATTCACCGGCCTTGAAAGATCCTCATGGAAGTGAGGATGCTAGTTCCAATCCTGCCAATAAGAATAACAATGAAAGCAGTGATGCTTCTCAAAATACAAGCAATCATGGTTTGACTAGCAGGACTGTGTGCTCCAAATCTCAGTCTGAGGAAAAATCATCTGAGGATGCTAGTTCCAATCCAGCCAATAAGATTAACAACGAAAGCAGTGATGCTTCTCAAGATACAAGCAATCAAGGTTTGACTGGCATGACTGTGTGCTCCAAATCCCATTCTGAGGAAAAATTATCTGATTCTGTTTCAGAAAATTGTACTTCCCTTTCTAATTCTAGTCATGGGGTACTCGAAAAGAAAAATAAAATATTGATGTCGTCTCCTGTCAACGATCCATCATCCAAATGCCAACTCATCTCACCAAATGACATTTCTACAAATGGTCTTCCATCAGATCGCTTAGATTGTCATGAAATTCCAGCTTCGGGTCAAGCAACTGCACATTTTGACCTAGGTACGGTAAAAAACCTAGTTGAACCTGTTTCTGACGGGAAACCTCATGCTTTCACTGATATGAGTTGTGATCCACCAGGACTTGACCAAAACCCTGTGTCGGATTCTCGAGTGGCAGATAATGCTTTGTCTTTTAAAGAGTTAGATATGAATGATGCCCATGTTGAGGTACTTGAAGCTGGTCCTTTAGGGAATTCATCTCAGGCGAACAATACCAAAGAGAATAATGAGAGTGAGGATGTCTCTGGTTCTGTTCTTAATCATGCTATCACTGATATGAATTGTGATCCGCCAGGACTTGACCAAAACACTGTGTTGGATTCTCGAGCGGTGGACAATGCTTTGTCTGTTAAAGACTTGGATATGAATGATGCCCATGTTGATGTTCTTGAAGCTGGCCCTTTAGTGAATTCATCTCAAGGGAACAATACCAAAGAGAATAATGAAAGTGAGGATGTCTCTGGTTCTGTTCTTAATCATGCTATCACTGATATGAATTGTGATCCACCAGGACTTGACCAAAACCCTGTGTTGGATTCTCGAGCGGTGGACAATGCTTCGTCTGTTAAAGACTTGGATATGAATGATGCCCATGTTGAGGTTCTTGAAGCTGGTCCTTTAGTGAATTCATCTCAGGTGAACAATACCAAAGAGAATAATGAAAATGAGGACGTCTCTGGTTCTGTTCTTAATCTTGCTATCACTGATACGAATACCGATTCACCAGAACTTGACCAAAATCCTGTGTTGGATTCTCTAGTGGTGGACAACGCTTCGTCTTTTAAAGACTTCGATATGAATGATGCCCATGTTGAGGTTCTTGAAGCTGGCCCTTTAGTGAATTCATCTGAAGGGAACAATACCAAAGAGAATAAGGAAAATGTAGATGTGTCTGGTTCTATTCTTAATCATGCTTTCACTGATATGAATAGTAAATCACCAGGGCTCGACCAAAATTCTGTTTTGGATTCTCAAGTGGTGGATAATGTTTTGCCGTTTAAAGTGTATGATATGAATAGTCCCCATGTTGAGGTTCTTGAAGCCGGTCCTTTAGTGAATTTGCCTCAGGGGAACAATACCAAGGAGAGTAATGAAGATGTCTCTGGTTCTGTTCTTAATCATGCTGGTGAGAGTTCCTTGCAGGTAAGTTCTGATTTGAATGGTGAAATTGCATATGAAAGGGAAAAGAATTCACATTTGGACACAGAAGTTGCTTCAAATGAAATGCATTTGGATGAAACTGGCCTAAATGCTTCTGGTGATACTACTGAGACTGATCCAGCATTGAATGGTTGA 4905 0.4171 MEPSARIASPSGVVVKNRSSSGCLIVRKKGDGLGAGVGGGSSSRKQYESKKVRKKPKADSSDSESSGELPSARRIGPETIRVCNSLSALERGGNVGSGEISRKRERMDQIRRNGDGMVDGNGLERRDKKVKLDVFDFDEYDGVGAERMRRRQFDNDEVGLGGGRFMGTMHSGRGSIDREFETGSSKRIVDKRKNSYYDKASGSHLGDSADHSRIKMKKDGTQRPLPLMKEKFNSDESIRVQGKNGVLKVMVNKKKVGGSAEHYDHRKPVESRQSLRAEGTSKRNVPIRPSSHLETKSAEKQGLLVRPEKKQITKKSLSSKEDSKGDEQDSDNNDASINLEIKNIKTHTSSKKITSENEQTPVHPTTKSSEGKIRRGSGTEKQKLREQIREMLLNKGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLIEDDQQAKAKGEGSSFAPIADDVLSQLTRKTRKKMEKDLKMKKKKQRVDDGDSGKERQIKRIPGKKLHMSVIDSDSNEDKLSSFVKQGSKSMKTKLTENAVTGGSSKSQNAIAEKPFSESDPQVLLGRKSRKHGRCTLLVRSSNKGLNSESDDFVPYTGKRTVLSWLVDSGVVQVSQKVQYRRRKRVMLEGWITREGIHCGCCSKILTVSKFEVHAGSKVPQPYQNIYLDSGVSLLQCQIDAWEKQENFGKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWRCPNCTCKFCGLANGTIDKEDNATVYALRTCVLCEKKYHDSCTKDMGVLLADSNMSGHSFCGKSCKELFEQLKKYLGTKHELDAGFTWCLVRRTDDDSEAASRGITQRVECNSKLAVALTVMDECFLPVVDRRSGINIIHNSLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIELALCSLKVEKLVIPAISELVLTWTTVFGFTHLEEPLRQEMRSLNMLVFPGIDMLQKLLAEQGKLEDAEQFENEDVSIKPAVVNRLDINSPALKDPHGSEDASSNPANKNNNESSDASQNTSNHGLTSRTVCSKSQSEEKSSEDASSNPANKINNESSDASQDTSNQGLTGMTVCSKSHSEEKLSDSVSENCTSLSNSSHGVLEKKNKILMSSPVNDPSSKCQLISPNDISTNGLPSDRLDCHEIPASGQATAHFDLGTVKNLVEPVSDGKPHAFTDMSCDPPGLDQNPVSDSRVADNALSFKELDMNDAHVEVLEAGPLGNSSQANNTKENNESEDVSGSVLNHAITDMNCDPPGLDQNTVLDSRAVDNALSVKDLDMNDAHVDVLEAGPLVNSSQGNNTKENNESEDVSGSVLNHAITDMNCDPPGLDQNPVLDSRAVDNASSVKDLDMNDAHVEVLEAGPLVNSSQVNNTKENNENEDVSGSVLNLAITDTNTDSPELDQNPVLDSLVVDNASSFKDFDMNDAHVEVLEAGPLVNSSEGNNTKENKENVDVSGSILNHAFTDMNSKSPGLDQNSVLDSQVVDNVLPFKVYDMNSPHVEVLEAGPLVNLPQGNNTKESNEDVSGSVLNHAGESSLQVSSDLNGEIAYEREKNSHLDTEVASNEMHLDETGLNASGDTTETDPALNG 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05405 1634 MobiDBLite consensus disorder prediction 478 496 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 1264 1285 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 161 184 - -
Trre2g05405 1634 ProSitePatterns Zinc finger PHD-type signature. 705 744 IPR019786 -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 1088 1124 - -
Trre2g05405 1634 SMART PHD_3 704 745 IPR001965 -
Trre2g05405 1634 CDD PHD2_CHD_II 705 744 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 1 122 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 1266 1285 - -
Trre2g05405 1634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 693 807 IPR013083 -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 353 367 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 1133 1147 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 1338 1357 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 468 510 - -
Trre2g05405 1634 PANTHER PHD FINGER PROTEIN 12 336 1145 IPR042163 GO:0003714|GO:0045892
Trre2g05405 1634 MobiDBLite consensus disorder prediction 1047 1081 - -
Trre2g05405 1634 Pfam PHD-finger 705 747 IPR019787 -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 257 383 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 368 383 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 293 331 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 1035 1147 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 1599 1634 - -
Trre2g05405 1634 ProSiteProfiles Zinc finger PHD-type profile. 702 747 IPR019787 -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 97 122 - -
Trre2g05405 1634 SUPERFAMILY FYVE/PHD zinc finger 694 750 IPR011011 -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 533 556 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 1615 1634 - -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 533 552 - -
Trre2g05405 1634 Pfam Tify domain binding domain 627 677 IPR032308 -
Trre2g05405 1634 MobiDBLite consensus disorder prediction 257 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05405 Trre-Chr2 60725387 60732260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05405 12 1042 PHD Transcription Factor Family AT4G14920 48.493 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre2g05405 TDBD 4.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05405 - - mtr:25485216 2416.34