Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05400 ATGCTTCTGAATAAAGGCTGGACCATAGACTATCGCCCACGACGGAACAGAGACTATTTAGATGCAGTTTACATTAATCCTGCGGGAACAGCTTATTGGTCCATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGATTGAGGATGATCAACAGGCCAAGGCCAAAGGGGAGAGTTCTTCTTTTGCTCCTATTGCTGATGATGTGCTCAGTCAATTGACAAGGAAAACTCGGAAGAAGATGGAGAAAGATTTGAAGATGAAGAAGAAGAAGCAAAGACTTGATGACGGTGATGGTGGAAAAGAACGGCAGATTAAAAGAATTACTGGCAAAAAGCAACATATGAGTGGGATTGATAGTGATAGCAATGAAGATAAGTTAAGCTCCTTTGTCAAGCAAGGAAGTAAATCAATGAAAACAAAATTGACTGAAAATGCTGTTACCGGTGGTAGCTCTAAAAGCCAGAATGTTACTGCTGAAAAATCAATCTCTGAAAGTGATCCTCAGATCCTACTTGGAAGGAAAAGTAGAAAACATGGACGGTGCACTTTATTAGTTCGTAGTTCTAACAAGGGATTGAATTCAGAATCTGATGACTTTGTTCCATATACGGGCAAACGAACAGTGCTTTCCTGGTTGGTTGACTCGGGGGTAGTACAAGTTAGTCAAAAGGTTCAATATCGCAGGAGGAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGAAGGCATTCACTGCGGTTGTTGTAGTAAGATCCTCACGGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCGCAGCCATATCAAAACATATATTTAGATTCTGGAGTTTCCCTTCTACAATGCCAAATAGATGCGTGGGAAAAACAAGAAAATTTTGGGAAAATCAGTTTCCATTCAGTAGATGTCGATGGTAATGATCCAAATGATGATACATGTGGTATATGTGGAGATGGAGGGGATTTAATCTGCTGTGATGGGTGTCCATCAACATTTCATCAGAGTTGCCTGGATATACAGATGCTTCCTCCAGGGGAATGGCGTTGTCCAAATTGCACCTGTAAATTTTGTGGACTAGCCAATGGAACTATTGACAAAGAAGACAATGCAACTGTATATGCCCTACGTACTTGTGACTTATGCGAGAAAAAATATCATGACTCCTGTACTAAGGATATGGGTGTCCATCTTGCCGACTCCAATATGTCAGGGCATTCCTTTTGTGGAAAAAGCTGCAAAGAGCTTTTTGAGCAATTGAAGAAGTACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACTTGGTGTCTTGTTCGTAGAACAGATGATGATTCTGAGGCAGCTTGTAGGGGAGTTACCCAGAGGGTGGAATGCAACTCCAAGCTGGCTGTTGCACTGACTGTGATGGACGAATGCTTTTTACCTGTTGTTGATAGGAGGAGTGGAATCAATATAATCCATAATAGTTTATATAATAGCGGGTCAAACTTCAGTCGGTTGAATTATACTGGCTTTTATACGGCTATTTTGGAGCGGGGTGATGAAATAATTTCTGCTGCATCTATCAGGTTCCATGGGACTAAGTTAGCAGAGATGCCATTCATTGGAACTCGCCATATATATAGGCATCAGGGAATGTGCCGTCGGCTTTTTTCTGCCATTGAACTTGCACTTTGCTCTATGAAGGTTGAGAAACTGGTTATTCCCGCAATTTCTGAACTTGTTCTTACGTGGACAACAGTATTTGGCTTCACACATCTTGAGGAACCACTCAGGCAAGAAATGCGGTCATTGAATATGTTGGTGTTCCCCGGTATTGATATGTTACAGAAGCTTCTAGCAGAGCAAGGAAAACATGAGGATGCCGAGCAGTTTGAGGATGAAGACGTTTCAATCAAGGCCACTGTGGTCAATAGGTTAGATATCAATTCACCGGCCTTGCAAGATCCTCATGGAAGTGAGGATGCTAGTTCCAATCCTGCCAATAAGAATAACAATGAAAGCAGTGATGCTTCTCAAGATACAAGCAATCAAGGTTTGACTGGCAGGACTGTGTGCTCCAAATCTCATTCTGAGGATGCTAGTTTCTCTGCTGCACTTGTATAA 2112 0.42 MLLNKGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLIEDDQQAKAKGESSSFAPIADDVLSQLTRKTRKKMEKDLKMKKKKQRLDDGDGGKERQIKRITGKKQHMSGIDSDSNEDKLSSFVKQGSKSMKTKLTENAVTGGSSKSQNVTAEKSISESDPQILLGRKSRKHGRCTLLVRSSNKGLNSESDDFVPYTGKRTVLSWLVDSGVVQVSQKVQYRRRKRVMLEGWITREGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQIDAWEKQENFGKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWRCPNCTCKFCGLANGTIDKEDNATVYALRTCDLCEKKYHDSCTKDMGVHLADSNMSGHSFCGKSCKELFEQLKKYLGTKHELDAGFTWCLVRRTDDDSEAACRGVTQRVECNSKLAVALTVMDECFLPVVDRRSGINIIHNSLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIELALCSMKVEKLVIPAISELVLTWTTVFGFTHLEEPLRQEMRSLNMLVFPGIDMLQKLLAEQGKHEDAEQFEDEDVSIKATVVNRLDINSPALQDPHGSEDASSNPANKNNNESSDASQDTSNQGLTGRTVCSKSHSEDASFSAALV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05400 703 Pfam Tify domain binding domain 237 287 IPR032308 -
Trre2g05400 703 FunFam Increased DNA methylation 1 305 357 - -
Trre2g05400 703 MobiDBLite consensus disorder prediction 88 106 - -
Trre2g05400 703 MobiDBLite consensus disorder prediction 646 703 - -
Trre2g05400 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 375 IPR013083 -
Trre2g05400 703 SMART PHD_3 314 355 IPR001965 -
Trre2g05400 703 ProSiteProfiles Zinc finger PHD-type profile. 312 357 IPR019787 -
Trre2g05400 703 MobiDBLite consensus disorder prediction 652 696 - -
Trre2g05400 703 SUPERFAMILY FYVE/PHD zinc finger 300 356 IPR011011 -
Trre2g05400 703 CDD PHD2_CHD_II 315 354 - -
Trre2g05400 703 PANTHER PHD FINGER PROTEIN 12 1 683 IPR042163 GO:0003714|GO:0045892
Trre2g05400 703 ProSitePatterns Zinc finger PHD-type signature. 315 354 IPR019786 -
Trre2g05400 703 Pfam PHD-finger 315 357 IPR019787 -
Trre2g05400 703 MobiDBLite consensus disorder prediction 78 162 - -
Trre2g05400 703 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05400 Trre-Chr2 60685741 60690354 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05400 1 652 PHD Transcription Factor Family AT4G14920 56.992 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre2g05400 TDBD 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05400 - - mtr:25485216 1234.55