Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05396 ATGCTTATGACCAAGGAATTTGGAATTAACATCAGCGAGAAGCTAGCTTCTGTCGAAGCTCGAATTCTTCCCGCTCCTTGGCTTAAATATGACGAAAGTGGGAAAGAAAAGAATTGTTTACCCCATGTTGGTCAGTGGAATATGATGAATAAGGAATTTAATTTGGAGCCTGTTATCCCTATCTACAACGCGAAGCCTGAGCAAATGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCAACAAACAAAACTAAAGGAAAGGAATTGGAGCTTTTGCTAGCAATATTGCCAGACAATAATGGTTCTCTCTATGGTGATCTCAAGCGAATCTGTGAAACTGACCTTGGTTTAATTTCACAATGTTGTCTTACAAAGCATGTGTTCAAAATCACTAAACAGTATTTAGCTAACGTGTCTCTGAAGATCAATGTTAAGATGGGAGGTAGAAACACTGTTCTTCTAGACGCCGGAAGCTACAGAATACCATTGGTTAGCGACATACCAACCATAATTTTTGGAACAGATGTTACACACCCTGAAAATGGAGAAGACACTAGCCCCTCAATAGCAGCTGTAGTAGCGTCCCAAGATTGGCCTGAAGTAACAAAATGTGCTGGTTCAGTATGTGCTCAAGCTCCTAGACAAGAACTTATACAAGATTTATACAAACCTTGGCATGATCCTGTTCGTGGCACAAAAAGCAACTGGACAAAAGCCGCTTCGAATTATATTTTACAGGATTGTGTAAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTGGACGCAATCCGGAAGGCATGTGCATCCTTAGAGCCAAACTATCAGCCTCCAGTAACTTTCATCATTGTACAAAAAAGACATCATACTCGTCATGCTGGCATCCAGGGTACTAGTCGGCCAGCTCACTATCATGTTCTATGGGACGAAAACAATTTCACAGCAGATGGAATTCAATCTTTAACAAATAATCTTTGTTATACATATGCTAGGTGCACACGATCCATATCCATTGTTCCTCCAGCATATTATGCACATTTAGCAGCCTTTCGAGCCCGTTTCTATATGGAACCAGATATGCAACAAGAGAATGGTTCTTCAGGTGATGGTAATTCTAGTCATAATAGTTCCAAGGGAACAACAAGAGCAGCTGGAGAATGTGGTGTTATGCCATTACCAGCTTTGAAAGATAATGTTAAGAGAGTGATGTTTTACTGTTAA 1224 0.3995 MLMTKEFGINISEKLASVEARILPAPWLKYDESGKEKNCLPHVGQWNMMNKEFNLEPVIPIYNAKPEQMEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAGSYRIPLVSDIPTIIFGTDVTHPENGEDTSPSIAAVVASQDWPEVTKCAGSVCAQAPRQELIQDLYKPWHDPVRGTKSNWTKAASNYILQDCVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIVQKRHHTRHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSISIVPPAYYAHLAAFRARFYMEPDMQQENGSSGDGNSSHNSSKGTTRAAGECGVMPLPALKDNVKRVMFYC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05396 407 Gene3D - 35 157 - -
Trre2g05396 407 ProSiteProfiles Piwi domain profile. 91 358 IPR003165 GO:0003676
Trre2g05396 407 SMART Piwi_a_2 91 358 IPR003165 GO:0003676
Trre2g05396 407 CDD Piwi_ago-like 5 357 IPR045246 -
Trre2g05396 407 MobiDBLite consensus disorder prediction 361 383 - -
Trre2g05396 407 Pfam Piwi domain 293 357 IPR003165 GO:0003676
Trre2g05396 407 Pfam Piwi domain 92 292 IPR003165 GO:0003676
Trre2g05396 407 Gene3D - 293 407 IPR036397 GO:0003676
Trre2g05396 407 SUPERFAMILY Ribonuclease H-like 83 359 IPR012337 -
Trre2g05396 407 MobiDBLite consensus disorder prediction 361 385 - -
Trre2g05396 407 Gene3D - 160 292 IPR036397 GO:0003676
Trre2g05396 407 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05396 Trre-Chr2 60673490 60677137 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05396 5 407 Eukaryotic Initiation Factors Gene Family AT5G43810 68.474 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05396 K11593 - gmx:100819073 657.907