Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05393 ATGACCGTTGTAAAGAATGGAGCAACTGAGATCTTGCCAACTGATGAGTCAGATGATGACTGTGTGATAATTCCAAATCCTGAAGGCTATCAACCTGTTGAAACAATTGCCAATGAAGAAGTTGAGGACTATGTGAATGTTTCAAATTTTGGAGGTTGTTCTCAACCTGTTGATACATTTATTGATGAAGAGGATGGCCATGATCAATCCCCTCCAGAATTTCTCACTGGCGCCATGAGAAAATTCCCTGCATTCAATGATGATCGAAAGTTTGGTTGGAGGCTTACGATCAGTCATGCTTATGCTACTTCAACTAAGCATCAGGTTTTGCATATTCCAGCGGACACTGTTAAGCAAGTTCTTAAAAATAGGAAGAGCATTGTGATTAGAACTCCCCACAAGTTGGATGGGATCAAGTGCAATATAGTCACCTACAGAAGGAAACCAGGGAAGGTGGAGATGTATCTTAGCAAGGGTTGGTTTGAGTTCATGAGAGCTAACAGTTTGAGGAAGGGAGATGTATTAGAATTTCAACTGTCGGATCCGCCCGAAGCTGTGGCTGTGGACATTATTCGAGGAAGCAGTTGA 588 0.4218 MTVVKNGATEILPTDESDDDCVIIPNPEGYQPVETIANEEVEDYVNVSNFGGCSQPVDTFIDEEDGHDQSPPEFLTGAMRKFPAFNDDRKFGWRLTISHAYATSTKHQVLHIPADTVKQVLKNRKSIVIRTPHKLDGIKCNIVTYRRKPGKVEMYLSKGWFEFMRANSLRKGDVLEFQLSDPPEAVAVDIIRGSS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05393 195 ProSiteProfiles B3 DNA-binding domain profile. 95 194 IPR003340 GO:0003677
Trre2g05393 195 Gene3D - 78 194 IPR015300 -
Trre2g05393 195 Pfam B3 DNA binding domain 104 192 IPR003340 GO:0003677
Trre2g05393 195 SUPERFAMILY DNA-binding pseudobarrel domain 102 182 IPR015300 -
Trre2g05393 195 CDD B3_DNA 95 192 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05393 Trre-Chr2 60615685 60616357 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g05393 B3 1.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05393 - K01087 tpra:123886203 140.969