Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05387 ATGAAAAAAAGGGTAAAAGAGTACAGGGTGGTGATCAAGTTTGTTGCTAGAGCAAACTTGCATCATTTGGGCCAGTTTCTAGCTGGTAAGCGTGCCGATGCACCGCAGGAGGCACTTCAAATTCTTGATATTGTACTAAGAGAGCTATCAACTAAGAGGTATTGCCCCATTGGGAGGTCTTTCTTTTCACCTGATATAAGAACACCACAACGGCTTGGAGAGGGATTGGAATCATGGTGTGGATTCTACCAGAGCATAAGGCCCACTCAGATGGGCCTTTCTCTCAATATCGATATGGCATCTGCTGCGTTCATTGAGCCTCTTCCAGTTGTAGAATTTGTTGGCCAGCTGCTAGGAAAAGATGTGCTGTCAAGGCCATTGTCGGATGCTGATCGAATCAAGATTAAGAAAGGCCTTAGAGGAGTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGCGTAAGAAGAAAATATCGTGTTTCAGGGTTAACTTCTCAGCAAACAAGAGAACTTGTGTTTCCTGTTGATGAGAATTCAACTATGAAGTCGGTAGTTGAATACTTTCAAGAGATGTACGGTTTCACTATTCAATATACTCACCTACCTTGCCTTCAAGTAGGCAACCAAAAGAAGGCCAATTACTTACCTATGGAGGTTTGA 663 0.4284 MKKRVKEYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKGLRGVRGVKVEVTHRGSVRRKYRVSGLTSQQTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05387 220 ProSiteProfiles PAZ domain profile. 140 220 IPR003100 GO:0005515
Trre2g05387 220 Pfam PAZ domain 136 220 IPR003100 GO:0005515
Trre2g05387 220 FunFam Protein argonaute-2 101 220 - -
Trre2g05387 220 Pfam Argonaute linker 1 domain 56 106 IPR014811 -
Trre2g05387 220 CDD PAZ_argonaute_like 107 220 - -
Trre2g05387 220 SMART DUF1785_2 55 107 IPR014811 -
Trre2g05387 220 Gene3D paz domain 101 220 - -
Trre2g05387 220 Pfam N-terminal domain of argonaute 3 46 IPR032474 -
Trre2g05387 220 SUPERFAMILY PAZ domain 26 220 IPR036085 GO:0005515
Trre2g05387 220 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05387 Trre-Chr2 60565587 60566979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05387 3 220 Eukaryotic Initiation Factors Gene Family AT5G43810 85.321 1.45e-134 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05387 K11593 - gmx:100816999 412.149