Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05363 ATGTTCCTAAATTCTACTGCCCCTTTAAGTATTGTTCTTCAATGTTCCTTGATGAGAATGAAGGAGAAAAACATAATATTATCAGGGAATCTTAGTGCCCTTTTTGTCAGACTGTTTTGTGCAAGGTGTCATGTTCCTTGGCATCATGGGGTTGCTTGCGAGGGGTTTCAGAAATTGAATGTGGATGAAGATCTTCTTCTTAGTGAGCTTGCTAATCAGAAAAAATGGGAAATAAGTCTCAAATGCAAGTTCTATATTCAAATATACGACGATTGTTTTCATATGACCTGTAGGTGCTTATGTGAGTTTTGCTATCTTTGTGGAGAGGAATGGACACGTAATCACCCAGGGCTGTGTTAG 360 0.3861 MFLNSTAPLSIVLQCSLMRMKEKNIILSGNLSALFVRLFCARCHVPWHHGVACEGFQKLNVDEDLLLSELANQKKWEISLKCKFYIQIYDDCFHMTCRCLCEFCYLCGEEWTRNHPGLC 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05363 119 SUPERFAMILY RING/U-box 63 117 - -
Trre2g05363 119 Pfam IBR domain, a half RING-finger domain 73 117 IPR002867 GO:0008270
Trre2g05363 119 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 111 IPR031127 GO:0004842|GO:0016567
Trre2g05363 119 Gene3D - 51 119 - -
Trre2g05363 119 ProSiteProfiles TRIAD supradomain profile. 1 119 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05363 Trre-Chr2 60404886 60405398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05363 39 108 C3H Transcription Factor Family AT2G19610 41.333 2.54e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05363 K11975 - cit:102618889 116.316