Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05354 ATGCCGTGTGATTTCTGTTGTGGTGAGCCTAAATTTTGCCGTGAATGTTGCTGCATTCTTTGTTACAAAGCTGTTGATTCAACTCATGGTGGCTATAGCTATATTATGTGCAAAGTAAAACACGATGATGCTATTTGTGGGCATATTGCTCATCTGGAATGTGCTTTTCGAGCTTACACGGCTGGCACCTTAGGGGGAATGATAGGATTGGATGCTGAATATTTTTGCCGGCGCTGTAATGGGAGAACTGAACTAATTTCTCATGTTCATAAGCTTCTACTGACATGCGAAACTATTGATTCAGATGATGTGAAGGAAAAAATGTTAAATCTTGGCATTAATCTCTTACACGGTTCAGAGAAAGTCGCAGCAAAGGAGATTATGAGTCGAATTACATTGGCCATGTCAAAGATATAA 417 0.3981 MPCDFCCGEPKFCRECCCILCYKAVDSTHGGYSYIMCKVKHDDAICGHIAHLECAFRAYTAGTLGGMIGLDAEYFCRRCNGRTELISHVHKLLLTCETIDSDDVKEKMLNLGINLLHGSEKVAAKEIMSRITLAMSKI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05354 138 Pfam PHD - plant homeodomain finger protein 1 113 IPR032881 -
Trre2g05354 138 PANTHER ADAPTER PROTEIN, PUTATIVE-RELATED 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05354 Trre-Chr2 60345918 60346334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05354 9 135 PHD Gene Family AT3G24440 25.954 2.00e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05354 - - tpra:123898368 232.646