Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05340 ATGTTCTCTTTCCCTAATAATAATTTTCTTTCATCTTCTTCTTCACCTTCTTCTTTATCTTACCCTAATACCCTTTCTTCTTTTCTTGAAAATGATTTTCCAAATAACAACACTACTCTACTTGATCATGAACCTATTCCTTTCACTACAACAACACATCATGATAATATTGTTCCATTATTCCATGATCATAACCACCATGATGTTTCTAATTTTTCAGATTGTAATAACATTGGAATGTTTGAACAAGATACTTCAAACTTTGCTAGTATTCTTCAAATTCCAAATTTTGTTGTGACAGAACAGAAACAATTACCAGCAACAGTGATTAATGGAGGTAAAAAAGATAGACACAGCAAGATTCACACTTCACAAGGTTTAAGAGACAGAAGGGTAAGATTGTCAAGTGAAATAGCTAGAAAATTCTTTGATCTTCAAGATATGTTAGAGTTTGATAAACCTAGTAACACACTTGAGTGGCTTTTCACTCAATCTGACACTGCAATCAAAGAACTTGCTAGAACTAAAAACGGCGGTTACAACGACAATAAGGCTTTGTTTGATTCGAATAGTAACAAATCATTTTCCGGCGGCGGTGGTGGTGGTGGTGGTGGTGGTGACGGTTGTTCTTCGAAAGGTAGAAAATTGAAATGGACACAAAAAGAAGAAACAAAAAAGGAATCAAGAGAAAGAGCTAGAGCAAGAGCAAGAGAAAGAACTTGTTACAAGATGTGTAGTAGTGGAAGAATTCAAGAAGAAATTAGGTATCCTACAACAACAGATTCAACAACTACTCAACAAATGTTACTTCAACAATTGATGTCATCAACATCATCACCTGTTGATAGTACTGAAACTGAGGCTTATGCAAGATGGCGTCAGCTTCTTCAACTTCAAACCTATAATAACAACTCTTCACTTCATAATAATCATAATCATCATAATCACTTATTGGATAGTGATATAGCTAGAGATCATGGTGGATTTAATGTCATTGAAGAATCTATTATGATTAAAAGGAACATGATCTACTATGAATCTATCTACATGCTTCATGAATCAGTGAGGTTGGAAAGTATTGGGAGAAGAGAAAGAATCAGAGGCAACACTAATTTGCTAGTTTTCGGTAATATCTGA 1137 0.343 MFSFPNNNFLSSSSSPSSLSYPNTLSSFLENDFPNNNTTLLDHEPIPFTTTTHHDNIVPLFHDHNHHDVSNFSDCNNIGMFEQDTSNFASILQIPNFVVTEQKQLPATVINGGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTQSDTAIKELARTKNGGYNDNKALFDSNSNKSFSGGGGGGGGGGDGCSSKGRKLKWTQKEETKKESRERARARARERTCYKMCSSGRIQEEIRYPTTTDSTTTQQMLLQQLMSSTSSPVDSTETEAYARWRQLLQLQTYNNNSSLHNNHNHHNHLLDSDIARDHGGFNVIEESIMIKRNMIYYESIYMLHESVRLESIGRRERIRGNTNLLVFGNI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05340 378 MobiDBLite consensus disorder prediction 214 235 - -
Trre2g05340 378 Pfam TCP family transcription factor 113 246 IPR017887 -
Trre2g05340 378 ProSiteProfiles TCP domain profile. 114 172 IPR017887 -
Trre2g05340 378 ProSiteProfiles R domain profile. 226 243 IPR017888 -
Trre2g05340 378 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 112 314 IPR005333 GO:0003700
Trre2g05340 378 MobiDBLite consensus disorder prediction 196 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05340 Trre-Chr2 60248301 60249852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05340 114 257 TCP Transcription Factor Family AT1G67260 41.916 1.11e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre2g05340 TCP 7.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05340 - - psat:127091957 362.844