Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g05336 | ATGGATTCCAATAACCCTTACGAGATCGACGACGATGAAGACGATGAGGGATTGGATTGGGAAGCAGTTGCAAGAGCAACCGACGCCGTTTGCCAATTGCAAAGTGAAGCAAAATCAACTGGAAACGAAGCGGAAAAGGTTTATCAAAAGGGGAAGGAAAAGGGAAAGGGAAAGCAATCCACTCTCGATAATTTCGTTCGAATTTCGAAAAATGAAATTGAAACGATTCAGTTTCAAGAAAATGATGTTGAAGAATCTCCTTGCACTCACCTCATTGATACTGAAGCAGCCAAAACTTGGATATACCCAGTTAATGTTCCTCTCCGTGACTATCAATTCCATATTACCCAGACTGCACTCTTTCAAAACACATTGGTCGCCTTGCCAACAGGACTTGGCAAAACCCTCATTGCCGCTGTTGTCATGTTTAACTACTTTAGATGGTTTCCTGAGGGAAAAATAGTATTTGCTGCTCCTTCTCGACCACTTGTCATGCAACAGATAGAAGCATGCCATAACATTGTGGGGATACCTCAAGAATTGACAGTTGATATGACTGGTCAGTTAAGTCCTCCCAAAAGAGCTCGTTTGTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTTTTGGAAAAAGACATTCAATCGGGCAAATGTTTGGTGAAGTACTTGGTATGTTTGGTGATTGATGAAGCTCACAGAGCAATGGGAAATTACTCTTATTGTGAAGCAGTTCGTGAGATAATGGCTGTACCAGTGCAACTAAGAATATTAGCGTTAACTGCAACACCAGGATCAAAGCAGCAGACCGTCCAGGATGTTATTAATAATTTGCATATCTCCAAGCTCGAACATCGCAGTGAAACTGACCATGACGTTATATCATATGTTCACGACAGGAAGATAGAGTTGATACAGGTTGCAATGGGCCAAGATGCTGTAGAAATAAACAATAAGTTTTTGGAAGTGATACGCCCTATTGTAGCCAGGCTTACTAATATTGGGGCCATTCAGAATAGAGATTATCGTACTTTGAGCCCTTGTGTATTACTTGAAATGAGGGAAAAGTTTCGTCAGGGGCACATGCAAGATCTTTCACATATCAACTCTGGAGATGTTGAAGGGTATTTTGGAGTTCTTATTACTCTTTATTACATCCATAAACTGCTTTCAAGTCACGGAATAAGGCCAGCACATGAGATGCTTGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATATATGAGTAAAAATGAAGATATTCTGAAAGCAAGGCAACTAATGCAGCAAAGCTTGTCTCATGGAGCATCGAGTCCCAAGTTGTCCAAAATGCTAGAAGTATTACTGGAGCATTTCAAAACCAATGATCCACAAAACTCCAGGGTGATTATTTTCTCCAATTACAGAGAAAGTGTCAGGGACATAATGGTTGCACTTGGAGGTACTGGGGATCAAGTTAGAGCTACCGAGTTTATTGGTCAAAGTTCAGGGAAAACAATGAAAGGCCAGTCGCAGAAAGTTCAACAGGCTGTGCTTAAGAAATTTCGGTCCGGTGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTAGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGTATGGGGAGAACTGGAAGAAAGCATGATGGACGAATTCCCCACGTCCTTAAACCAGAAGTTCAATATGTTGAACTGTCTATTGAGAAATTTATTCCCCGTCAAAAGAATGTTATAGAAGACCATCTTCAAATTTCTGCATCGAAAGACAAACTCACTCTCGATGAAATTGGTTTACTTGAAAAATATTTTCCCTCTACCGGTGAAAATAGATGTAGATTGTCTCTTATCGCTTTCCCTCACTTTCAGACGTTTCCTTCTAGAGTTCATAAAGTGAAGCATTCCTATGGATCATTGATGCTTATAGACACAATGCAGCGTTTGCAAGGACTGCCCACATGTCCAGGAGATAGCGAAAATTCTTCCCTTCAGGAAGGGCGGTGTTTAGGAAATAGTAAGCCAGTTCTCATTATCGATCTTGATGAAGCTAAAAACGATAATGAATTATGCTCTAGGGATGCAATGGGAAGGAATGTAGATTCTGTTAATTGTCTGGAGCTGGATTCCAGTGACATGGAGCATCAAGAGGAAACATGTGATGTTAATGAGACAATTCCCAAGACTCCAGATGCCAAGAGAACTTTGTCAAATGAAGGAGCTAATGCCACTGAAACAGAAAATCCTATTGAGCAGACTTCTTCACTGGCTATAGATGCTTGTGATAATGACATGAGAGATGAAGAACTTAGCCCTCGTTTAACTAATTTGAGTATAAGTGGTGTTGTTCCTGAGTCTCCCATTGATGAAAGAGGGCAATCAAGAAACAGGTTTGTCATTCGAGGTTGTATTTCACCTGTTCATCTCCAGGAAAAACATGATGTTCCCTCTTTAAGTTGCAGGGAAACTGAAAAAGTCATTGTTGATAGTGGCAGTGGTAAGAATGTATGTACTTCCCCTGTTAATGAAACCCAAACCCCTTTGCTTGAGTTGAAGAATTGTGCAATTAGAAGAGGACGTGTCTTTGTTTCTCAAATTGAGGAAGGGCGTATACATATTGTTGACCCAAGCTTCAGCGAAGAATCACATCCAAGTTGTGGTGAAAGATCTGTAAGCATTAAACCTGCTCGCAAATTTAAAAGGTTGAGGAAAGTTGAAGATACTGAAAGTAACATGAATCAGAAAAAGAATAATATTTTTGATTCAACAGTGAACTTTTCAAAACCATCTCCTGCCAACAGTCCCACACGATATAAGCATGGCCAAGGTATAAGGAAACTGGCCAATGTGAGAGACTTCATTGAGGAGGAAGCCGAGGTATCTTCAGATGCTTCTGTATCTAATGATGAAGATGTCGAGGATGGCAATTCTTGTGACAGTTTCATAGATGACCGTATCAATGCTACAGCAGCCAGTCAGCCTGAAGCTAGTAGAATAGACATGATGGCAATTTACAGGCGTTCGTTGCTCAGTCAAACACCTATTAGTGGAGTACCTAAATTTTCCACTACCTTCAGTCCTGACAATGTGACTATGACAGCCAGTATTGGTGAAAGTGGTAATTCATCAGGCAAGACAGCGAGTCGTTTCCAGACAGGACAGACCAGTCATTCAGCTAATCGAACTTCAGAATCAGTATGTCTGGACCAGATGACCTCAGAAGCAATGCCTTCGACCAGTTTTCCAACTGGGACAGATATAAGAAGCCGTAAAAGAAGATTGGCATTTCATCATTCTGGACATTTTCCAAGTATGAATCTTGAACCTGAATTTGCACTTCAATCAAAGAAAGAATCAGTGAATGGCAATGCAACTATAGAAGTTCTATGTGATGATCAATTTTATAATGATATTGATCTTGATGAGTTGGAGGCGCAAGCAACTTCGATTCTGAAACGGAAATTAGATTTGTCAATTCCGAAACAAGATATAAACCCTCAATCTCATGAACCGAACCTTGATGTTAGTATGTCTCCGTCATTCGACCTTGGTATATGA | 3603 | 0.4027 | MDSNNPYEIDDDEDDEGLDWEAVARATDAVCQLQSEAKSTGNEAEKVYQKGKEKGKGKQSTLDNFVRISKNEIETIQFQENDVEESPCTHLIDTEAAKTWIYPVNVPLRDYQFHITQTALFQNTLVALPTGLGKTLIAAVVMFNYFRWFPEGKIVFAAPSRPLVMQQIEACHNIVGIPQELTVDMTGQLSPPKRARLWKTKRVFFVTPQVLEKDIQSGKCLVKYLVCLVIDEAHRAMGNYSYCEAVREIMAVPVQLRILALTATPGSKQQTVQDVINNLHISKLEHRSETDHDVISYVHDRKIELIQVAMGQDAVEINNKFLEVIRPIVARLTNIGAIQNRDYRTLSPCVLLEMREKFRQGHMQDLSHINSGDVEGYFGVLITLYYIHKLLSSHGIRPAHEMLERKLKQGFFAKYMSKNEDILKARQLMQQSLSHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMVALGGTGDQVRATEFIGQSSGKTMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRIPHVLKPEVQYVELSIEKFIPRQKNVIEDHLQISASKDKLTLDEIGLLEKYFPSTGENRCRLSLIAFPHFQTFPSRVHKVKHSYGSLMLIDTMQRLQGLPTCPGDSENSSLQEGRCLGNSKPVLIIDLDEAKNDNELCSRDAMGRNVDSVNCLELDSSDMEHQEETCDVNETIPKTPDAKRTLSNEGANATETENPIEQTSSLAIDACDNDMRDEELSPRLTNLSISGVVPESPIDERGQSRNRFVIRGCISPVHLQEKHDVPSLSCRETEKVIVDSGSGKNVCTSPVNETQTPLLELKNCAIRRGRVFVSQIEEGRIHIVDPSFSEESHPSCGERSVSIKPARKFKRLRKVEDTESNMNQKKNNIFDSTVNFSKPSPANSPTRYKHGQGIRKLANVRDFIEEEAEVSSDASVSNDEDVEDGNSCDSFIDDRINATAASQPEASRIDMMAIYRRSLLSQTPISGVPKFSTTFSPDNVTMTASIGESGNSSGKTASRFQTGQTSHSANRTSESVCLDQMTSEAMPSTSFPTGTDIRSRKRRLAFHHSGHFPSMNLEPEFALQSKKESVNGNATIEVLCDDQFYNDIDLDELEAQATSILKRKLDLSIPKQDINPQSHEPNLDVSMSPSFDLGI | 1200 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g05336 | 1200 | MobiDBLite | consensus disorder prediction | 43 | 58 | - | - | |
Trre2g05336 | 1200 | CDD | DEXDc_FANCM | 106 | 287 | IPR044749 | GO:0005524 | |
Trre2g05336 | 1200 | MobiDBLite | consensus disorder prediction | 973 | 996 | - | - | |
Trre2g05336 | 1200 | PANTHER | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER | 4 | 569 | - | - | |
Trre2g05336 | 1200 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 151 | 569 | IPR027417 | - | |
Trre2g05336 | 1200 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 441 | 614 | IPR001650 | - | |
Trre2g05336 | 1200 | MobiDBLite | consensus disorder prediction | 740 | 765 | - | - | |
Trre2g05336 | 1200 | MobiDBLite | consensus disorder prediction | 745 | 765 | - | - | |
Trre2g05336 | 1200 | Gene3D | hef helicase domain | 312 | 435 | - | - | |
Trre2g05336 | 1200 | MobiDBLite | consensus disorder prediction | 936 | 952 | - | - | |
Trre2g05336 | 1200 | CDD | FANCM_ID | 315 | 430 | IPR039686 | GO:0006281|GO:0043138 | |
Trre2g05336 | 1200 | MobiDBLite | consensus disorder prediction | 977 | 992 | - | - | |
Trre2g05336 | 1200 | FunFam | Fanconi anemia, complementation group M | 103 | 298 | - | - | |
Trre2g05336 | 1200 | Gene3D | - | 104 | 298 | IPR027417 | - | |
Trre2g05336 | 1200 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 115 | 283 | IPR014001 | - | |
Trre2g05336 | 1200 | MobiDBLite | consensus disorder prediction | 936 | 956 | - | - | |
Trre2g05336 | 1200 | MobiDBLite | consensus disorder prediction | 34 | 58 | - | - | |
Trre2g05336 | 1200 | Pfam | Helicase conserved C-terminal domain | 448 | 564 | IPR001650 | - | |
Trre2g05336 | 1200 | MobiDBLite | consensus disorder prediction | 1052 | 1078 | - | - | |
Trre2g05336 | 1200 | SMART | ultradead3 | 104 | 297 | IPR014001 | - | |
Trre2g05336 | 1200 | Pfam | Type III restriction enzyme, res subunit | 121 | 265 | IPR006935 | GO:0003677|GO:0005524|GO:0016787 | |
Trre2g05336 | 1200 | CDD | SF2_C_FANCM_Hef | 439 | 569 | - | - | |
Trre2g05336 | 1200 | SMART | helicmild6 | 475 | 565 | IPR001650 | - | |
Trre2g05336 | 1200 | FunFam | ATP-dependent RNA helicase, putative | 428 | 584 | - | - | |
Trre2g05336 | 1200 | MobiDBLite | consensus disorder prediction | 1177 | 1200 | - | - | |
Trre2g05336 | 1200 | Gene3D | - | 436 | 582 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g05336 | Trre-Chr2 | 60173921 | 60185266 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g05336 | 414 | 563 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 28.947 | 3.69e-07 | 52.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g05336 | K10896 | - | gmx:100820078 | 1472.6 |