Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05335 ATGGATGCAACAAAGAACAAGAACACCCCTGTTTCCAACTTACAAGAAGAGGATAAGTTTTTGTTTGACTACTTCAATAGTCTATCGCCTTTAAAGACCAAAGAGCGCGTTGAAGCTACTCAAATGTTGAACTCACTTGGGATGGATTATTCTCTTTTCGCATCACCTGATGCGCCCATTCACGAGGATTCCATAGTCCTCGTGAGGAATAAAACTTTGAGCACATCAAAGCCAACTCATAAAGAAGCTATTACTGATTCTGCTCATGCATGTCATTACTCACTTGAGCCATCTAGTCAACATACAAAGATTGAACTTCCACAAGCTATGCATGATAATCCTTGTAGCTCCGAACAACGTCCTCTAATTTCAGCCGAAGAGGCTAACTGGGCTCTTGAATTACTTGGCATGCAAGTACCAAATTGTACAAATATTCAGGAAGTAGGTCAGGTTGAGGAAAACATCGAAGGAGCGTATTGTGAATACAATAACTTAAGTAGTATAACACAATCAGTGAATCTGCTGCCACAATCTACCACTAATAGTAATTATAAAATGCAAAATGTTGAACATGTTGCTTCTAGTTCAAAACATGAAATTGATTATAATCCTTCTGAACCTATAGCTGAAACAGACATAAATCAAATATGGAACAATCTTGCTAATCCAATTGCAAAAGGGATCGATGAGGTTGCTAGAATTAGCCGCAGTATAATGAATTCATCTCCAAGCCACCAGCCTGAGATGACCAGTTTGCAAAGGAACAACTCTTTTTATACTTCAAACATTAGTTCATGTACAACAATATCTGATAAGATGAATGCTATTATTGAAAAGCCATTGCTTCCGAGAAAAAACAAAAATTATTCTTCTGGAAGGAAACCTGAATCACCGAGCTGCACTTCTTCTTTGCACCTTTCTGCGAGGCAAGGGCATCACCTATTGCCGGTCCCTACACCAATGGAAAGACAATTGGAGCCATCTGAGAATGATGATTTCACTAAGTCATCAGTTCACATTCCTGGTGAAGATTTGTGTTGGAGTACCCTTGACCTGATGAGTAGAGTGAAATTTAATGACCTAACTAATAAACTATTGGATCAAAACATGAAAAGGACGGTGAAAGTGCAGAATACAGGTTCGGTTGGTCTAGTTTCTTCTGCCTCAGAACATGAAATGAAAGAAGAAAGTGCTGATTTCTTTCAGAATATTCCCAAAAGGAAGAGGAAAGTGAAAAGGTCGAATCTAACCGGGGAAGGAGGTGCATGCAGAAGCTGTAAATGTAAAAAATCAAGGTGTTTGAAAAATTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGGATCTTGCTCATGTCAAGACTGCTCAAATAAAGGAGATAATGAACATACAGTTCTGCAAGCTCGCAGGAATAATGATTCTAAAGTCGTAACAAGTTCTAATTCCTCGCCACAATTTGGGGAGGACCCTAACATAATTTTGGCTTCAAAGCTACAGAAAAGAGCATGTAATTGCAATAAATCAGGTTGCCAGAGGAAATATTGCGCATGCTTTAAGGATGGTGTTGGTTGCTCTCCAAGTTGTAAATGTCAAGGGTGCAAAAATATACATGGTAGAAAGGATAGCACAACCGAAACAAAATCCGAGCTTGAAGAAACAAAAGCATTACAAATTTCCAGAACATTGCCTCCATCACCTTATTCATTGATGGGAAAGCCGCCACACATATCTTGTTCTGAATTGTTGGGCAGGAAAAACGACGAGCCTGTGGAATCAAATACTAATCCGGAATGTGAAAATGACGTCGAATCATCTCCTACTCGCAGTGGTGGCATGAACTCCATTAGAATGAGGACAATTTTGTTACAATAG 1875 0.3925 MDATKNKNTPVSNLQEEDKFLFDYFNSLSPLKTKERVEATQMLNSLGMDYSLFASPDAPIHEDSIVLVRNKTLSTSKPTHKEAITDSAHACHYSLEPSSQHTKIELPQAMHDNPCSSEQRPLISAEEANWALELLGMQVPNCTNIQEVGQVEENIEGAYCEYNNLSSITQSVNLLPQSTTNSNYKMQNVEHVASSSKHEIDYNPSEPIAETDINQIWNNLANPIAKGIDEVARISRSIMNSSPSHQPEMTSLQRNNSFYTSNISSCTTISDKMNAIIEKPLLPRKNKNYSSGRKPESPSCTSSLHLSARQGHHLLPVPTPMERQLEPSENDDFTKSSVHIPGEDLCWSTLDLMSRVKFNDLTNKLLDQNMKRTVKVQNTGSVGLVSSASEHEMKEESADFFQNIPKRKRKVKRSNLTGEGGACRSCKCKKSRCLKNYCECFAAGVYCIGSCSCQDCSNKGDNEHTVLQARRNNDSKVVTSSNSSPQFGEDPNIILASKLQKRACNCNKSGCQRKYCACFKDGVGCSPSCKCQGCKNIHGRKDSTTETKSELEETKALQISRTLPPSPYSLMGKPPHISCSELLGRKNDEPVESNTNPECENDVESSPTRSGGMNSIRMRTILLQ 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05335 624 MobiDBLite consensus disorder prediction 292 308 - -
Trre2g05335 624 MobiDBLite consensus disorder prediction 284 337 - -
Trre2g05335 624 ProSiteProfiles CRC domain profile. 422 539 IPR005172 -
Trre2g05335 624 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 5 571 IPR044522 GO:0003700
Trre2g05335 624 SMART CXC_2 499 540 IPR033467 -
Trre2g05335 624 SMART CXC_2 421 462 IPR033467 -
Trre2g05335 624 MobiDBLite consensus disorder prediction 594 614 - -
Trre2g05335 624 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 502 536 IPR005172 -
Trre2g05335 624 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 424 459 IPR005172 -
Trre2g05335 624 MobiDBLite consensus disorder prediction 586 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05335 Trre-Chr2 60164392 60167122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05335 373 555 CPP Transcription Factor Family AT3G22780 44.162 1.28e-41 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre2g05335 TCR 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05335 - - tpra:123897031 842.802