Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05331 ATGATGGATCCACCAGGGAACAAGAACCACCCTTTTTCCAACAAACAAGAAAAGGATGATTATTGGTTTCACGAATACATCGTTAGTCTACTCTCAGTTGAGGAGCCTGTCTCTATTGATGAATTGCTTGGCAAGCAAGAAACAGGTGTTGGCTATGTACAAGAAAATGGTGGAACGAAACCTGAGCTACCGAGCTACACATCTTCATTACATGAGAAGAATGCTGCTAGTAATGAAAATGCATTGCTTCCTAGTGATTACACTAGTGATTCACAAAGGTGTGTTTTGCCAAGAAATTATTCTTATGTGATTGCACTTCCAGCCTTAAATAGGTCTTCTGCAACGAAAATTGAATCATCGAGCAGTACTTCGTCTTTGCTTCTTTCTGCCAACGAAGGGAATTGCCTATCGCAGGTCCCTGAATCAACGGAGAGATATTTGGAGCCATCTGAGATTGAAGCTCGGGCTACTAAAGATTTCACTCTGTCATCAGTTCACATTGCTAGGTCTTCTGCAACGAAAATTGAATCGCCAAGCAGCACTTCTTCTTTGCTTCTTTCTGCCAGCCAAGGGCATCGCCTATCGCTGAACCCTGCATCATCGGAAAGACATCTAAGGCCATCTGAGAATCAATTTCAGGCTACTAAAGATTTCACTCAGTCATCAGTTCACAATGCTGGTGAAGATTTCAGTCAAAGTCTCTCCAAAAGGAAGAGGAAAGTGCACAGTTCTGATCGAACTGAGGAACGAGGGTCATGCAGAAACTGCAACTGTATGATGTCAAACTGTTTGAAACCTAATTGTGAATGCTTTGCTGCCGGAGTCTACTGTACAGAACCTTGCTCGTGTAAAGAGTGCTTAAATAAACCTATTGATGAATATATAACAATTCTGCAAACTCAAAGGAAGATTGAGTCTAGCAATTCACACTTACTTGTTCCTAAAGTCATAAGAAGTCCTGATACCTCACCTCGGGATAACTCCAACAAAACTCCAGCATCAAAGAATTGCAAAACAATGTGCAATTGCAAGAAAACAAGCTGCAATAAGAAATCTTGTTCTTGTTCTAAGGGTGGTGTCGGTTGCTCCATTAGCTGTAAATGTGAAGGGTGCGAAAATATATACGGTAGAAAGGATAACCAAGACCAAGAACTTCGGCGGGAATCAAATGCTATTGGATCTCAAACTAAATTTGAAAAGCATTTTCAAACTGTTCCAGATGATGGGATTCAAGTTACATTCCATAACACTAATTACAAAATTTAA 1266 0.4052 MMDPPGNKNHPFSNKQEKDDYWFHEYIVSLLSVEEPVSIDELLGKQETGVGYVQENGGTKPELPSYTSSLHEKNAASNENALLPSDYTSDSQRCVLPRNYSYVIALPALNRSSATKIESSSSTSSLLLSANEGNCLSQVPESTERYLEPSEIEARATKDFTLSSVHIARSSATKIESPSSTSSLLLSASQGHRLSLNPASSERHLRPSENQFQATKDFTQSSVHNAGEDFSQSLSKRKRKVHSSDRTEERGSCRNCNCMMSNCLKPNCECFAAGVYCTEPCSCKECLNKPIDEYITILQTQRKIESSNSHLLVPKVIRSPDTSPRDNSNKTPASKNCKTMCNCKKTSCNKKSCSCSKGGVGCSISCKCEGCENIYGRKDNQDQELRRESNAIGSQTKFEKHFQTVPDDGIQVTFHNTNYKI 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05331 421 SMART CXC_2 251 292 IPR033467 -
Trre2g05331 421 SMART CXC_2 335 377 IPR033467 -
Trre2g05331 421 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 254 289 IPR005172 -
Trre2g05331 421 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 339 373 IPR005172 -
Trre2g05331 421 ProSiteProfiles CRC domain profile. 252 376 IPR005172 -
Trre2g05331 421 MobiDBLite consensus disorder prediction 226 251 - -
Trre2g05331 421 MobiDBLite consensus disorder prediction 231 251 - -
Trre2g05331 421 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 67 403 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05331 Trre-Chr2 60141961 60144162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05331 234 379 CPP Transcription Factor Family AT3G22780 54.730 3.23e-46 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre2g05331 TCR 6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05331 - - tpra:123912855 340.887