Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05327 ATGGAATCCCCTTATAGTTATGGCCTTACCATAAAATTCTTAGTTATCCTCCTTACAATTCTCAACTCCATTAATCCCTCATACCAATCACTACCAAAACTAAATCCAAGACTCATCAAAGCCTACACAGCACTTCAAGCATGGAAACATACATTTACCTCTGACCCTAAAAACTTCACCTCAAATTGGTATGGCCCAAATGTATGCAACTACACAGGTATCTACTGTGCACCATCACCAGATGATCCCTACATCTACACAGTTGCTGGTATAGACATAAACCATGCAAAAATAGCAGGTTCATTACCAGAAGAGCTTGGTCTTTTAACAGACTTAGCTCTTTTCCATATAAACTCAAATAGTTTCTATGGTTCCATCCCAAACAGTTTCAGTTATCTTCACCGTCTCCACGAACTCGACATTAGTAACAATAAATTCTCAGGATCATTTCCCGAACCGGTTCTCTGCATTTCATCATTAAAATTCTTAGACATAAGATTCAATAATTTTCAAGGAAATGTTCCTGAGAAACTTTTTGACCTTAAACTTGATGCTCTTTTTATTAACAACAATAAATTCCAATTTTCTTTGCCTGAAAATTTTGGAAACATGCCGGCTTCTGTTGTGGTGTTCGCGAATAATGATATTAAAGGTTGTATTCCATCGAGCGTAGTAAATATGAAAGATACGATTAACGAGATTATAATGACGAATAGCGGAATGAAAGGCTGTTTACCAGACGAAATCGGGAATTTGGATAAAGTGACAGTGTTTGATGTTAGTTTTAATGAGTTTGTTGGTGAATTGCCTGATTCTATTGGTAGAATGAAGAGTTTGGAAGAGTTGAATGTGGCGCATAATCGATTTTCGGGTGTGGTTCCGGAGAGTATATGTAGGTTGCCAAGGTTGGAGAATTTTACTTATTCTTATAATTTCTTTAGTGGTGAATCGGAAAGTTGTGTTAAGTTGGGTAATCATAAGGATGATAAGAAGAATTGTATTCCTTTTAGGCATTTGCAAAGGTCTAGTCATGAATGTGAAGTATTTTATGAACATCCTGCTCATTGTACTGGTGTTGGTTGTACTTTTACAACTCTGTCACCTCCACCACCACCTCCCCCTCCTCCACCACCGCCTCCACCACCGCCTCCACCTCCACCACCACCTCCACCTCCTCCCCCACCCCCGCCTCCTCCACCACCTCCGCCTCCACCTCCTCCGCCACCTCCACCTCCCCCACCCCCGCCTCCACCTCCTCCGCCACCTCCACCTCCCCCACCTCCTCCACCTCCACCACCCCCGCCTCCTCCAGTAGCTTACTACCATTATCTTTGA 1335 0.4225 MESPYSYGLTIKFLVILLTILNSINPSYQSLPKLNPRLIKAYTALQAWKHTFTSDPKNFTSNWYGPNVCNYTGIYCAPSPDDPYIYTVAGIDINHAKIAGSLPEELGLLTDLALFHINSNSFYGSIPNSFSYLHRLHELDISNNKFSGSFPEPVLCISSLKFLDIRFNNFQGNVPEKLFDLKLDALFINNNKFQFSLPENFGNMPASVVVFANNDIKGCIPSSVVNMKDTINEIIMTNSGMKGCLPDEIGNLDKVTVFDVSFNEFVGELPDSIGRMKSLEELNVAHNRFSGVVPESICRLPRLENFTYSYNFFSGESESCVKLGNHKDDKKNCIPFRHLQRSSHECEVFYEHPAHCTGVGCTFTTLSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPVAYYHYL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05327 444 Pfam Leucine rich repeat N-terminal domain 43 76 IPR013210 -
Trre2g05327 444 SUPERFAMILY L domain-like 41 323 - -
Trre2g05327 444 MobiDBLite consensus disorder prediction 367 431 - -
Trre2g05327 444 Gene3D Ribonuclease Inhibitor 40 335 IPR032675 -
Trre2g05327 444 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 30 437 - -
Trre2g05327 444 FunFam Leucine-rich repeat extensin-like protein 1 42 203 - -
Trre2g05327 444 PRINTS Proline rich extensin signature 413 434 - -
Trre2g05327 444 PRINTS Proline rich extensin signature 381 397 - -
Trre2g05327 444 PRINTS Proline rich extensin signature 367 379 - -
Trre2g05327 444 PRINTS Proline rich extensin signature 401 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05327 Trre-Chr2 60110399 60111733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05327 32 361 Leucine-rich Repeat extension Gene Families AT3G22800 65.559 3.35e-158 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05327 - - tpra:123881562 731.095