Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05326 ATGGGGAAAAAAGGTAAATGGCTTAAAAACTTGTTGACAGGGAAGAAGGACAAAGAAAAAGAGAAAGAAAAAGAAAATCAGAATTTTTCAAATGGAACAGAAAATCCAACTACTCCAGTTTCAACATCAACAACAACAAAGGAGAAAAAGAGATGGAGTTTTAGAAGATCATCAGCAGCAGCTACACCAACAGTTTCCAAGGAATTGAATAACTCAGATGCTATTGCTTCAATGACAGTGCAAAGTACTGTCACTGATATTCAGAATGAGCAGAGGAATCATGCTATGGCTGTAGCTGTTGCTACGGCCGCAGCAGCTGATGCAGCGGTTGCGGCTGCTGTGATCCGCTTGACTTCTGGTTCAAATGAGACTTCTAGAAGTATTGAAGATTCAGCTGCTGTTAAAATTCAATGCGTCTTTCGATCTTACTTGGCAAGAAAGGCATTGTGTGCTCTAAGAGGATTAGTGAAGTTGCAGGCACTGATAAGGGGTCACTTGGTGAGAAAACAAGCTAAGGCAACACTTAGATGTATGCAGGCTTTGGTCACAGCACAAGCTAGAGCTCGAGCTCAAAGGATCCGAATGGTGTCGGAAGGAAAGCCTAATCCAAATCAATCAACTCCCAGAAATGCTATGGAAAATGACTTATTCAGGCAAATATATAATGAAATGGACAGAAGCTTAGAGGACAATATCAAGATTGTGGAAATGGACTTTTGTGAATCAAAAGGTAACTCTACAAGCAGAAGCAGCAGTGTATATAATCATGGACAACATTATGAACAATCTGAACATAGATATTCCACAAATGGTTCTTACTCAAAAGAAGAAAACTACAAAGTATCACCAGCTCCATCAGCTTTAACAGAATTGAGTCCAAAAGCAAGCAGTGGCCATTTTGAAGATTGTTTCAGTACAGCTCAAAACAGCCCTCAATGCTATTCCGCAAGATCGAAAACCGACGGTTCAATTACAAATCATCCTTTTTCTTTCCCTAGGCCATCTTATGCTGAACCTATGTCCTATGATTACCCTTTGTATCCAAGTTACATGGCTAATACAGAATCATCAAGGGCTAAAGTTAGATCACAAAGTGCACCAAAACAAAGGCCAGATTCATTTGAAAAGCAACCAAGCCGCCGAAGAATTTCGGTCGAGGGAAGAAATGTACCTAGACCAGTGAGGATGCAGAGGTCATCTTCACAGGTAGGTGCAGCTGCTCAGAATTACCATTATCCATGGTCAATCAAGCTTGATAGATCCGCGGTTTCGCTCAAAGATAGCGAGTGTGGCTCGACAAGTACAATGCTCACAAATACTAATTATTGCAGATCCCTTGTTGCATATGATCCAGATGGAGATAGGTACTAA 1371 0.4085 MGKKGKWLKNLLTGKKDKEKEKEKENQNFSNGTENPTTPVSTSTTTKEKKRWSFRRSSAAATPTVSKELNNSDAIASMTVQSTVTDIQNEQRNHAMAVAVATAAAADAAVAAAVIRLTSGSNETSRSIEDSAAVKIQCVFRSYLARKALCALRGLVKLQALIRGHLVRKQAKATLRCMQALVTAQARARAQRIRMVSEGKPNPNQSTPRNAMENDLFRQIYNEMDRSLEDNIKIVEMDFCESKGNSTSRSSSVYNHGQHYEQSEHRYSTNGSYSKEENYKVSPAPSALTELSPKASSGHFEDCFSTAQNSPQCYSARSKTDGSITNHPFSFPRPSYAEPMSYDYPLYPSYMANTESSRAKVRSQSAPKQRPDSFEKQPSRRRISVEGRNVPRPVRMQRSSSQVGAAAQNYHYPWSIKLDRSAVSLKDSECGSTSTMLTNTNYCRSLVAYDPDGDRY 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05326 456 PANTHER IQ-DOMAIN 5-RELATED 1 386 - -
Trre2g05326 456 SMART iq_5 151 172 IPR000048 GO:0005515
Trre2g05326 456 SMART iq_5 128 150 IPR000048 GO:0005515
Trre2g05326 456 MobiDBLite consensus disorder prediction 373 388 - -
Trre2g05326 456 MobiDBLite consensus disorder prediction 29 47 - -
Trre2g05326 456 Coils Coil 8 28 - -
Trre2g05326 456 Gene3D - 129 180 - -
Trre2g05326 456 Pfam IQ calmodulin-binding motif 156 172 IPR000048 GO:0005515
Trre2g05326 456 Pfam IQ calmodulin-binding motif 131 149 IPR000048 GO:0005515
Trre2g05326 456 ProSiteProfiles IQ motif profile. 129 157 IPR000048 GO:0005515
Trre2g05326 456 MobiDBLite consensus disorder prediction 355 402 - -
Trre2g05326 456 MobiDBLite consensus disorder prediction 10 28 - -
Trre2g05326 456 MobiDBLite consensus disorder prediction 355 372 - -
Trre2g05326 456 MobiDBLite consensus disorder prediction 244 278 - -
Trre2g05326 456 Pfam Protein of unknown function (DUF4005) 310 389 IPR025064 -
Trre2g05326 456 ProSiteProfiles IQ motif profile. 153 180 IPR000048 GO:0005515
Trre2g05326 456 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05326 Trre-Chr2 60102153 60104376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05326 1 446 IQD Protein Family AT4G14750 45.259 2.25e-105 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05326 - - gmx:100817667 609.757