Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05325 ATGGCTGGTAGGTTACCTGGTGTTGGATTGTCACCAAGAAAAAGATCAGAAAATCATCACAACAGACATGAACACTATGTTACCTACAGAGACTCATCCTATCTAAGGGAATCATTAGAGACACCATGGACTTCAATGACTACTACCTTAGATGAAAGTGCTTTCAAAGCCAAACAAAGACTTCAGAAGAAACTTGGTTACTCTCCCAGGTCAATTGAAGAAAATCCCAAAAAAGGAAAAGAAAGTAAAAGCAGATTCCATAAGAAAGATGCAGGACTAGGTAAGAAGTTACTAGAAAGTTCATGGTTATTACGTGGAAACAAGTTTAAGAAAGAAACAAAAGTTTGTGCTGTGTGCTTAGAAGATTTCCATCAAGATGAAGAAGTTATGAACCTTTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTCCCTTGGCTTGAACAACACCCTCATTGTCCTTATTGTAGAACCATGGTTGTGCCAAGGGATTAG 495 0.3818 MAGRLPGVGLSPRKRSENHHNRHEHYVTYRDSSYLRESLETPWTSMTTTLDESAFKAKQRLQKKLGYSPRSIEENPKKGKESKSRFHKKDAGLGKKLLESSWLLRGNKFKKETKVCAVCLEDFHQDEEVMNLSCSHKYHSACLLPWLEQHPHCPYCRTMVVPRD 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05325 164 SMART ring_2 116 156 IPR001841 -
Trre2g05325 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 163 IPR013083 -
Trre2g05325 164 CDD RING-H2_PA-TM-RING 115 157 - -
Trre2g05325 164 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
Trre2g05325 164 Pfam Ring finger domain 115 157 IPR001841 -
Trre2g05325 164 SUPERFAMILY RING/U-box 115 162 - -
Trre2g05325 164 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 45 158 - -
Trre2g05325 164 MobiDBLite consensus disorder prediction 61 89 - -
Trre2g05325 164 MobiDBLite consensus disorder prediction 70 89 - -
Trre2g05325 164 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05325 Trre-Chr2 60083913 60085441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05325 110 161 C3H Transcription Factor Family AT3G58720 42.308 1.28e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05325 - - gmx:100527548 220.32