Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05320 ATGAACGGCGGAAGCACCGTCACCTCCTTCCGATCCATCCTCGACAAACCCCTTAACCAGCTCACCGAAGATGACATTTCTCAACTCACTCGTGAAGACTGTCGCAGATTCCTCAAAGATAAAGGGATGCGCAGGCCTTCCTGGAACAAATCTCAGGCGATCCAGCAAGTCATTTCTCTCAAAGCACTTCTAGAACCTACCGACGATGATCTCCCTGCTCCCGTCGGTGTCTCCTCCGCCATTCACCACCATCATCACCACCACCCTCAACCTCCTCAGAGGAATTTGAATGAAGCTCCGGCGAAGGGCTCCGATCCCGATGATACCGGTTTTCATACTGCGGAGGATCTTAACAAATCTACTTCAACTGCTGCAGAAATACCTACTGAAACGAATGATGCCAATGTTGTTAAACCCTCTGGGGGGTGTGTAGCTAGTGGGTTGTTTGGGCAAATGACAATTTTCTACTGTGGTAAGGTGAATGTCTATGATGGAGTCTCACCGGATAAGGCACGATCAATCATGCAGCTTGCTGCATGTCCATCCTCGTTTCCTCAGGATAATCTTTTAAATAAAAATGCAGCAGTGTGGGCTTCTCCTTGCAACATACCGATTGATAAGGATGTCCTCTTTCCCAATGACACAGCAATCCTTCAGGTTGCTCAAACAGATAAGATGGTGGAATATCCTCTGCAATACAGGGAGAAAGGGAGCATAGCTCGTGATGCTGATGTAGAGGGTCAGGCAAGCAGAAATGCGTCGCTGCAGCGATATCGTGAAAAGCGAAAGGACAGGGGAAGATCGAAGGGCAACAAACTGACTGGCATAACTTCATCTAACTTTGAGATGTATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGTAATTCAAGTCGTAGTAGCACTGACTCTCCACCACAGCCTAGACTGCCTCTAGTTTCCGGTGGCTCAGCTGAAAACCAGCCAAAAGTTACCCTTCCCATTGATTTGAATGATAAAGATGTTCAAGAATGCTAA 1020 0.4745 MNGGSTVTSFRSILDKPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQVISLKALLEPTDDDLPAPVGVSSAIHHHHHHHPQPPQRNLNEAPAKGSDPDDTGFHTAEDLNKSTSTAAEIPTETNDANVVKPSGGCVASGLFGQMTIFYCGKVNVYDGVSPDKARSIMQLAACPSSFPQDNLLNKNAAVWASPCNIPIDKDVLFPNDTAILQVAQTDKMVEYPLQYREKGSIARDADVEGQASRNASLQRYREKRKDRGRSKGNKLTGITSSNFEMYLNLPVKLHASNGNSSRSSTDSPPQPRLPLVSGGSAENQPKVTLPIDLNDKDVQEC 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05320 339 MobiDBLite consensus disorder prediction 241 275 - -
Trre2g05320 339 SMART tify_2 145 180 IPR010399 -
Trre2g05320 339 MobiDBLite consensus disorder prediction 292 339 - -
Trre2g05320 339 ProSiteProfiles Tify domain profile. 145 180 IPR010399 -
Trre2g05320 339 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 11 282 IPR040390 -
Trre2g05320 339 Pfam tify domain 151 179 IPR010399 -
Trre2g05320 339 Pfam Jas motif 248 265 IPR018467 -
Trre2g05320 339 MobiDBLite consensus disorder prediction 292 309 - -
Trre2g05320 339 MobiDBLite consensus disorder prediction 71 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05320 Trre-Chr2 60005757 60011660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05320 7 294 Tify Gene Family AT4G14720 45.215 8.25e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre2g05320 tify 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05320 - - gmx:100808970 471.085