Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05319 ATGAACGGCGGAAGCACCGTCACCTCCTTCCGATCCATCCTCGACAAACCCCTTAACCAGCTCACCGAAGATGACATTTCTCAACTCACTCGTGAAGACTGTCGCAGATTCCTCAAAGATAAAGGGATGCGCAGGCCTTCCTGGAACAAATCTCAGGCGATCCAGCAAGTCATTTCTCTCAAAGCACTTCTAGAACCTACCGACGATGATCTCCCTGCTCCCGTCGGTGTCTCCTCCGCCATTCACCACCATCATCACCACCACCCTCAACCTCCTCAGAGGAATTTGAATGAAGCTCCGGCGAAGGGCTCCGATCCCGATGATACCGGTTTTCATACTGCGGAGGATCTTAACAAATCTACTTCAACTGCTGCAGAAATACCTACTGAAACGAATGATGCCAATGTTGTTAAACCCTCTGGGGGGTGTGTAGCTAGTGGGTTGTTTGGGCAAATGACAATTTTCTACTGTGGTAAGGTGAATGTCTATGATGGAGTCTCACCGGATAAGGCACGATCAATCATGCAGCTTGCTGCATGTCCATCCTCGTTTCCTCAGGATAATCTTTTAAATAAAAATGCAGCAGTGTGGGCTTCTCCTTGCAACATACCGATTGATAAGGATGTCCTCTTTCCCAATGACACAGCAATCCTTCAGGTTGCTCAAACAGATAAGATGGTGGAATATCCTCTGCAATACAGGGAGAAAGGGAGCATAGCTCGTGATGCTGAGGGTCAGGCAAGCAGAAATGCGTCGCTGCAGCGATATCGTGAAAAGCGAAAGGACAGGGGAAGATCGAAGGGCAACAAACTGACTGGCATAACTTCATCTAACTTTGAGATGTATTTGAACCTTCCAGTGAAGCTCCATGCCTCAAATGGTAATTCAAGTCGTAGTAGCACTGACTCTCCACCACAGCCTAGACTGCCTCTAGTTTCCGGTGGCTCAGCTGAAAACCAGCCAAAAGTTACCCTTCCCATTGATTTGAATGATAAAGATGTTCAAGAATGCTAA 1014 0.4753 MNGGSTVTSFRSILDKPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQVISLKALLEPTDDDLPAPVGVSSAIHHHHHHHPQPPQRNLNEAPAKGSDPDDTGFHTAEDLNKSTSTAAEIPTETNDANVVKPSGGCVASGLFGQMTIFYCGKVNVYDGVSPDKARSIMQLAACPSSFPQDNLLNKNAAVWASPCNIPIDKDVLFPNDTAILQVAQTDKMVEYPLQYREKGSIARDAEGQASRNASLQRYREKRKDRGRSKGNKLTGITSSNFEMYLNLPVKLHASNGNSSRSSTDSPPQPRLPLVSGGSAENQPKVTLPIDLNDKDVQEC 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05319 337 SMART tify_2 145 180 IPR010399 -
Trre2g05319 337 Pfam tify domain 151 179 IPR010399 -
Trre2g05319 337 MobiDBLite consensus disorder prediction 290 337 - -
Trre2g05319 337 Pfam Jas motif 246 263 IPR018467 -
Trre2g05319 337 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 11 280 IPR040390 -
Trre2g05319 337 ProSiteProfiles Tify domain profile. 145 180 IPR010399 -
Trre2g05319 337 MobiDBLite consensus disorder prediction 71 115 - -
Trre2g05319 337 MobiDBLite consensus disorder prediction 290 307 - -
Trre2g05319 337 MobiDBLite consensus disorder prediction 240 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05319 Trre-Chr2 60005757 60011660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05319 7 292 Tify Gene Family AT4G14720 44.554 2.43e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre2g05319 tify 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05319 - - gmx:100808970 462.225