Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05315 ATGAATCTTCATCAAGGTGGAATTAAGGAGGAGTTTATGGGAGGAAGTTCTTCATTTTGTGTGGTTGGTAATCCTCAACCAATGGAAGGACTTCATGAAAATGGTCCTCCACCATTCCTTACAAAAACATATGATATAATTTCATGGAGTAGAGGGAACAATAGCTTTGTTGTTTGGGATCCTCAAGCCTTTTCCATTAGTCTTCTCCCTAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTTAGACAACTTAACACATATGGATTTATAAAGATTGATCCAGATAGGTGGGAATTTTCTAATGAGATGTTTCTAAGAGGACAAAAAATCCTTTTGAAAAACATAATTAGAAGGAGAAAAACAAATCAATCTCAACCAATGCAACTGCAACATCAAACTCTAGACCCTTCATGTGTTGAGGTAGGAAGATTCGGATTAGACGGAATTGAAATCGATCGGTTGAGGCGCGACAGACAAATTCTAATGGTTGAATTGGTGAAACTTAAACAACAGCAACAAAATACTAGAACTTACCTTGAAGCAATGGAAGAAAGGCTTAAAAGAACTGAACATAAACAAAAACAGATGATGAATTTCTTGGTAAGAGCAATGGAAAATCCTAACTTCTTGCAACAATTGGTTGAGAAGAAGGAATGGAGAAAAGAGTTAGAAGAATTTTTTTCTAAGAAGAGGAGAAGAACTATTGATCAAGGGCCTAGTAATGTTGAAGTAGGATATGATGAATTAGGATATGCTAATGAAGATAGTTTAACTTTTGTTAAACTTGAACCATATCAATATGTTGAGGGACATGCTAATCTCATGAATCAATTTGAAATTAGAGATAAAGAGATTGATGTTGAAGTGTTTTGGCAAGATTTGTTCAAAGAGAGTATTGAAGATGAAGTAGATGTTGAAGATGTAGATGTATTGGCTGAGCAACTTGGTTATCTTGCCTCTAGTCCTCCTAAATAG 978 0.3507 MNLHQGGIKEEFMGGSSSFCVVGNPQPMEGLHENGPPPFLTKTYDIISWSRGNNSFVVWDPQAFSISLLPRFFKHNNFSSFVRQLNTYGFIKIDPDRWEFSNEMFLRGQKILLKNIIRRRKTNQSQPMQLQHQTLDPSCVEVGRFGLDGIEIDRLRRDRQILMVELVKLKQQQQNTRTYLEAMEERLKRTEHKQKQMMNFLVRAMENPNFLQQLVEKKEWRKELEEFFSKKRRRTIDQGPSNVEVGYDELGYANEDSLTFVKLEPYQYVEGHANLMNQFEIRDKEIDVEVFWQDLFKESIEDEVDVEDVDVLAEQLGYLASSPPK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05315 325 Coils Coil 152 186 - -
Trre2g05315 325 SUPERFAMILY "Winged helix" DNA-binding domain 35 119 IPR036390 -
Trre2g05315 325 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g05315 325 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g05315 325 SMART hsfneu3 35 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g05315 325 Gene3D - 32 120 IPR036388 -
Trre2g05315 325 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 241 IPR027725 -
Trre2g05315 325 FunFam Heat stress transcription factor B-4 31 121 - -
Trre2g05315 325 Pfam HSF-type DNA-binding 43 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05315 Trre-Chr2 59970290 59971916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05315 20 322 HSF AT3G22830 52.473 9.92e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre2g05315 HSF_DNA-bind 5.2e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05315 K09419 - gmx:100809515 410.223