Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05310 ATGCCGAAGAATAATAACTTCTTCTTCATCTTCTTTTTGTCTCTTCTTTTTTCCATTCATGCTAAACTCCACCTTCACCCTTCAGACACAAAATCTCTCACAACTCTCCAAAACAACCTCGGACTAATCAACCTTAACACAACAAATCACCCATGTAATGCTGAGGGTGTGTTCTGTGAGAGAAGATTCAATAACAATGAAGGCTATTCCCTCAGAGTCACAAAACTTGTTTTCAAATCAAAACAACTCAGAGGAACACTTTCCTCAGCCATTGGAAAATTTACAGAGCTCAAACAACTCTCTCTTTCAAACAACAAACTCGTTGACAGAATCCCACCTTCCATAGTTGACTGTAGAAAGCTTGAAATTCTTAACCTTGCTAATAATCTTTTCTCTGGTGAAGTTCCTTCCGAATTACCTTCTCTCATTCATCTTCGTTTTCTTGATATCTCTGGGAATAAACTCTCTGGAAATTTAAATTTCCTCCGTTATTTTCCCAATTTGGAAATTCTCTTTGTTGCGGACAATCATTTTACAGGGAGAGTTCCGGCTTCTGTTCGTTCTTTTCGCAATCTTAGACAGTTTAACTTCTCTGGTAACCCTTTTCTTGAAGGCGTGCCGGTCAATCAGAAGCTTCTTGAATATCAAGATTATGATCATACTTTTCCAAAACGCTATATCCTTGTTGAGAGTTCAACTTCAACAAGGAGGGTTCATCACTCTCCAGCAGGTGCTCCAGCTCCTGGTCCTGCAGCAGCAGCTGCTAAACACAAGCATAAGACGGCCATGAAGAAGCTAGCTGGATGGATTTTTGGGTTTATAGCCGGAACATTCGCCGGAATACTTTTGGGTTTTGTGTTTCGGCCGCTGTTTAAGTTGCCTTTGACTTCGATTAAAGGAAAAGAAGAGGGTTCTGGTCCTACAATTTATAGTTCATTGATTAAGAAAGCTGATGATTTAGCTTTCTTGGAGAAAGAAGACGGCTTAGCTTCTTTGGAAATCATCGGAAGAGGTGGGTGTGGTGAGGTTTACAAGGCGGAATTGCCAGGAGATAATGGTAAAATGATTGCTATCAAGAAGATTAATGTTGATGAGTTAGCCCAAGAAAATTGTATGCAAATGAAGCAAATTAAGGCAGAGATCGATACCGTTGGCCAGATTCGTCATCGAAATCTTGTGCCTTTGTTGGCTCATATTTCTAGACCTGACTGCCAATACCTTGTGTATGAGTTCATGAAGAATGGTAGTTTGGAGAGTATGTTGACCAAATTTGAAAGAGGAGAAGCGGAGTTGGATTGGTTGTCAAGGCATAAGATTGCGCTTGGTATCGCAGCTGGTCTTGAATACCTTCACACGAGTCAAAGTATAATTCATCGAGATCTCAAGCCTGCAAACATTCTTCTTGATGATGATTTGGAAGCTAAGATTGCGGATTTTGGATTCGCAAAAGCAATGCCTGATGCACAGACGCAGATCACTGCTTCGATAGTGGCTGGCACTTTCGGATATTTCGCACCTGAGTATTTGGAGAGAGGGCAATTAAGTGACAAGTGTGATATATATAGCTTTGGTGTTATGCTTGGTTATTTGGTGATGGGAAAACCTCCTCTGAGTGAGTTTTTTTACACGAAAAGTGTAAGTTTGGTCGAGTGGATGAGAGATACTATAGCTTCAAAAAATCAGAAGGACGCAATTGATGCAAGGCTCGTTGGTAATGGTTTTCAGGAAGAGATGCTTCTGGTTTTGAAGATTGCATGCTTATGCACCGTGGGAAATCCTAAGGAGAGGCCTGACATTAAGACTGTTAGGTTTATGTTGTCTCAATGTGTTAAAAACTGGGCCGGACCGTCCGGTTCAACCGGACCTGACACCGTGGAAGTTGCACAGTATGAAGATATAGCCTTAAATGTGGACCATTACCCTGAAGAGGCAACCCTAATTCACTAG 1947 0.4124 MPKNNNFFFIFFLSLLFSIHAKLHLHPSDTKSLTTLQNNLGLINLNTTNHPCNAEGVFCERRFNNNEGYSLRVTKLVFKSKQLRGTLSSAIGKFTELKQLSLSNNKLVDRIPPSIVDCRKLEILNLANNLFSGEVPSELPSLIHLRFLDISGNKLSGNLNFLRYFPNLEILFVADNHFTGRVPASVRSFRNLRQFNFSGNPFLEGVPVNQKLLEYQDYDHTFPKRYILVESSTSTRRVHHSPAGAPAPGPAAAAAKHKHKTAMKKLAGWIFGFIAGTFAGILLGFVFRPLFKLPLTSIKGKEEGSGPTIYSSLIKKADDLAFLEKEDGLASLEIIGRGGCGEVYKAELPGDNGKMIAIKKINVDELAQENCMQMKQIKAEIDTVGQIRHRNLVPLLAHISRPDCQYLVYEFMKNGSLESMLTKFERGEAELDWLSRHKIALGIAAGLEYLHTSQSIIHRDLKPANILLDDDLEAKIADFGFAKAMPDAQTQITASIVAGTFGYFAPEYLERGQLSDKCDIYSFGVMLGYLVMGKPPLSEFFYTKSVSLVEWMRDTIASKNQKDAIDARLVGNGFQEEMLLVLKIACLCTVGNPKERPDIKTVRFMLSQCVKNWAGPSGSTGPDTVEVAQYEDIALNVDHYPEEATLIH 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05310 648 ProSiteProfiles Protein kinase domain profile. 329 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05310 648 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 68 159 - -
Trre2g05310 648 SUPERFAMILY Protein kinase-like (PK-like) 320 606 IPR011009 -
Trre2g05310 648 Gene3D Ribonuclease Inhibitor 16 224 IPR032675 -
Trre2g05310 648 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 55 608 - -
Trre2g05310 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Trre2g05310 648 Gene3D Phosphorylase Kinase; domain 1 320 411 - -
Trre2g05310 648 Gene3D Transferase(Phosphotransferase) domain 1 412 616 - -
Trre2g05310 648 Pfam Protein kinase domain 332 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05310 648 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Trre2g05310 648 SMART serkin_6 329 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05310 648 FunFam Leucine-rich repeat receptor-like protein kinase 412 615 - -
Trre2g05310 648 SUPERFAMILY L domain-like 50 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05310 Trre-Chr2 59935654 59937600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05310 9 608 Receptor kinase-like Gene Family AT2G31880 53.291 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Trre2g05310 Pkinase 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05310 - - gmx:100811980 707.212