Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05300 ATGAAAGCAGATAGCGAGTGCTTCGAGTGTCTCCAACACCGAATCAACTCAGATTTCTCCGACCAACTCGTCTTCAATTATGCCGTCTCCAATTCTCCTTTTCCTTTCGGATCTTCAGCTATTCTCAATATTACTGGTTCAGCAGGTGGTGAAGCTTCAAGCGGTCAATTTATATTGCAATACATTTCTAGTCATGAGAACAATTGTTTCACCAATTATGTAAATGAATATATTGTGGATAGTAGTGAAAGTACTATGAGTGATTATTGTGATAATGGTAGCGGTCAATATAATGATGTAGTTAATGGTGGAAATGGATTTGCCTTATCTGATGAGTCTGAAACTGGTAAAGCTCCATCCAAGGATACAACTTGTAATCATTCTGGAAGGTTTTCTTGCTCGAGGACAATTGCTTCGTTTGCTCCAGTTGCTCGTGTCGGAAAGTCTTCCTATTCTGTACTTCAAGAGGTTGCCAATGATTTCTTGTCCGGGTTAATTGAAGATCATGTGTTAGAATCACTTGATCTCTTCATTGAAGGGAAAGCATCTGGACGTGACAGTATGAATTTCCTTAATTTAATTGGGTTTCCATCATTTGAAGAAACTAATTTTCCAGGCTCTTTGAGGCATCCAAACATAGCTCCTGTACTTGCAATTTTGAAAACGTCTGACCACACTAACATGGTGGTGCTTCCGAAGACTCCATACAACTTAGAAAGTATTCTATATTTTAACCCCAATGCCTTAAAGTCTGACTGGAATAGAAGATTTCTTGTATATCAGGTACTCTCAGCTCTATTGTACTTGCATGGTTTAGGTGTTTCCCATGGTAATATATGCCCATCCAATATCATGTTGACTGACTCGTTATGGTCTTGGCTAAGATTATGGAATGAACCTGCATTGGAGTCAAATTTAACTTTGCAAGAGAGTGAAAGTAATAATTCAAAATGTGCAAAAATTGGTTGTTGTAATGGTGGTTGTCATTCTAATGATCTTTATGCTGATCTAAAGCTTTCCCCATTAATAGATTGGCATTCAAGCTTTCATCAGTGGTGGAAAGGAGAACTAAGTAATTTTGAGTATCTACTCATCTTAAACAGATTAGCAGGAAGAAGGTGGGGGGACCATACATTTCATCCAGTAATGCCTTGGGTTGTTGATTTTAGTTCAAACCCCGATGATAGTTGTGATGCAGGATGGCGGGATTTAAGCAAGAGTAAATGGCGTTTGGCAAAAGGTGATGAACAGTTGGATTTCACCTATTCAACATCTGAAATCCCCCATCACGTATCAGATGAATGTCTGTCTGAATTGGCTGTCTGCAGTTATAAAGCAAGAAGGTTGCCTTTGAGTGTTCTTCGAATGGCTGTTCGTTCAGTGTATGAACCTAATGAATATCCTTCTTCAATGCAGAGGCTCTATCAATGGACACCCGATGAGTGCATTCCAGAGTTTTATTGTGATGCCCAAATTTTTAGGTCTATACATGATGGTATGGCTGATTTGGCCATACCTTCTTGGGCAGAGAGCCCTGAGGATTTTATTAAATTGCATCGTGATGCATTGGAAAGTAATAGGGTGTCATTTCAACTCCATCACTGGATAGATATAATCTTTGGGTACAAAATGTCTGGCCAGGCCGCAATTGTTGCTAAGAATGTTATGCTTACTCAATCAGAATCCACAATGCCAAGATCAACAGGACGTCGTCAGCTCTTTACGAGGCCACACCCCATACGTCACGCTACTGCAAGAATAACACGTAACGGATCAAATAAATATGTCAAAGTTTTGACCCAAACAAATGAAATGCAGCGAGAAACATCACTTCTATCTGAAGCTGCTTATCTACAAGAATTGGAACAAGCATCTGCATTTTCGGAACATGCTAGGCATTTGAATGCTTGTTACTGTTATCCATTAAGTCAAATGAAAAGGAAGAACGCCTCATCTCCGGGAGATTCAACAGCAGGCGCATTTAGTAAAAATATAAGCAATGTATCTTTGAGTGACAAAAATTATTGGGTGCCGTATAAAATGAATCATATATCTTTTCTTCAAAATATGAAAGACGTAGATGAAGCCTCTTCAGGATATCCAGACTTGTTGCTCTGGAGGCAGACATTGTCTTCTTCAAGACTTGCCTCTGAAGATATTGCAAGGGACATATTTTCTGTCGGTTGTCTCTTGGCAGAACTTCATCTTTGCAGGCCGCTCTTTGATTCAATCTCATTGAAAATGTACTTGGAGGATGGAACATTACCAGGATTTCTGCAGGAACTACCTCCTCATGTTAGAATACTTGTTGAAGCATGCATCCAAACGGATTGGACGAGGAGGCCATCGGCCAAAATTCTCCTGGAATCACCTTATTTTCCAAAAACTGTCAAGTCCTCCTACTTGTTTCTTGCTCCACTTCAGCTTGTGGCTAAAGATGAATTTTGTCTTCGTTTTGCTGCAAATCTTGCAAAGCAGGGAGCTCTGAGGCAAATGGGTGCATTTGCAACTGAAATGTGTGCTACTTATTGCATACCACTTATAGTGAATGCTGTGAGTGATACTGAAGCTGAATGGGCATACATACTACTAGAGGAATTAATGAAATGCTTAACAGCACAAGCAGTGAAAATATTAATATTGCCAACCATACAGAAAATTTTACAGAACACAGGTTATTTACATTTAAAGGTTTCCCTTTTACAAGATTCATTTGTACGTGAAATATGGAACCGAGTTGGTAAACAAGCATACCTGGAAACTATTCACCCATTGGTCTTATCAAACTTGTATATTTCTCCGGATAAAAATTCAGCGGCGTCTGCTTCAGTGCTACTAATCGGTTCTAGTGAGGAGATTGGTGTACCAATTACCATCAATCAGACTATCTTGCCTCTTGTTCACTGCTTTGGCAAAGGACTGTGTGTAGATGGCATTGATGTGCTGGTCAGAATTGGGGGTATTTTTGGCGAATCCTTTATTGTTAAACAGATGTTACCATTACTGAAAAATGTTGTCCGATCCTTCATTGACGTGTCATGCACGAATAAGACTGATCCTGTTCAGAGCTGGAGTTCTTTAGCCCTTATTGATTGTATGATGACTTTAGATGGCCTTGTAGCTTTCTTGACAGAAGAAGTCATTGTAAAGGAGCTGCTTGAGGACATAAGTTGCATACACATTGGGGTTCTTAAACAGAAACATATGGAAATTGCCGTGCTTCAGGTTGCTGCTACTAATCTCTTTGGAATTTGCCAACGGATGGGAGCAGATTTGACGGCATTGCATATTCTTCCAAAACTGAAAGAACTGTTTGATGAGCTTGCTTTCTCCCAGGAAATTTCTAAAGGTTCGGCTACTGTCAGCAGAAACTTGAAGGATACCAAATTAAAAACTGGAGGGGACTTCCAAATTGAGAGTCGCATGGATCTAGTGTTGCTTCTCTATACCTCCTTTGCATCTCTTCTTGGGATAGAGAAACTTCGGCAATGTTGTGCTACATGGTTGCTTCTTGAACAACAACTTCTACGCCGCCATAACTGGAAGTGGGAACATGCAGGAGAATCATCGAAAAATGGCTCAGAAAATAACATTGCTAGAAGACCTGCAACTGCCCAGGGATTCACATCTGAATACAATCCAGCAAAATTGTTGCTTAATGGGGTTGGATGGTCAATTCCACAATCCCAGGGAAATAGAGGTACCAAAAATTTGATTCAGAGAAGACCATTTAAAATTCATCAAAGCCCAGTAGTAATGCAAGAAGGAATGCCAAATCAAGTGAACCATGAACCATGGTTTTGGTTCCCTAGTCCAGCCACCATCTGGGATGGGCCTGCATTTCTTGGGCGGGTGGGGATCCAAAAAGACGATCTTCCATGGAAGATCAGAGCATCTGTAATCTACTCCATACGTGCGCATCATGGAGCAGTGAGGTCTCTGGCTGTTCATCAGGATGAATCTACCGTTTTTACTGCTGGAATTGGCCAAGGATATAAAGGAACTGTTCTGAAGTGGGAATTGAGCCGAACTAACTGTCTGACAGGCTATTATGGCCATGAGGAGGTTGTGAACGATATCTGCATTTTATCATCTAGTGGAAGAGTGGCATCTTGTGATGGAACCATTCATATTTGGAATAGTCAAACAGGGAAGCAAATATCAGTATTTGCCGAGTCTGAAACAGAATCTGGCCATCCCATGAACCATTCAGCATCTGTGCCAAAAATCACCAGTGACCAGGCAAATGTCCTTAATTTGAATACTCTATCAAATGGGATGTTGTCTAGTGCTTTTGATTCAAGCCTTTATACTAGTATGCATCTGTTAGACTCTGCTGAAACTCTTGTAGTTGGCACTGGAAATGGTTCTCTCAGGTTCATCGATGTTGCTCGAGGTCAAAAGCTTCATATCTGGAGGGGGGATTCTAATGAATCTAGTTTTCATTCACTTATTTCTGCTATTTGTTCCTCTGGATCTAACAAGGCGCAAGCTGGTGGAATTTCCACCTCACCGTCTTTAATTGCAACTGGACTAAGTTCTGGTCACTGTAAATTGTTTGATGTAAAGAGTGGAAATGTCGTCGCTTCTTGGCGTGCTCATGATGGATTTGTGACAAAGTTGGCATCACCTGAAGAACATCTGCTCATTTCCAGCTCTCTGGACAGAACTTTACGAGTCTGGGACTTGAGAATGAATTTACCGTCACAGCCCATTATTTTCAGAGGTCATTCAGATGGCATATCCAGTTTCTCCATTTGGGGCCAAGATGTTATTTCAATTTCCCGGAATAGGATTGGGCTTCTTTCCTTGTCTAAATCTGCCATTGAAACGGATGGACATCACATTATCCCCCAGAAACTCTACGTTTCTTCTGATAATGGAATGAGAAGCTTGTCAGCATTATCAAGTATTAGTATACTTCCTTTCTCTCGATTGTTTCTTATTGGAACAGAAGATGGTTATTTGAGAATCTGTTGTTAA 4983 0.4054 MKADSECFECLQHRINSDFSDQLVFNYAVSNSPFPFGSSAILNITGSAGGEASSGQFILQYISSHENNCFTNYVNEYIVDSSESTMSDYCDNGSGQYNDVVNGGNGFALSDESETGKAPSKDTTCNHSGRFSCSRTIASFAPVARVGKSSYSVLQEVANDFLSGLIEDHVLESLDLFIEGKASGRDSMNFLNLIGFPSFEETNFPGSLRHPNIAPVLAILKTSDHTNMVVLPKTPYNLESILYFNPNALKSDWNRRFLVYQVLSALLYLHGLGVSHGNICPSNIMLTDSLWSWLRLWNEPALESNLTLQESESNNSKCAKIGCCNGGCHSNDLYADLKLSPLIDWHSSFHQWWKGELSNFEYLLILNRLAGRRWGDHTFHPVMPWVVDFSSNPDDSCDAGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSSMQRLYQWTPDECIPEFYCDAQIFRSIHDGMADLAIPSWAESPEDFIKLHRDALESNRVSFQLHHWIDIIFGYKMSGQAAIVAKNVMLTQSESTMPRSTGRRQLFTRPHPIRHATARITRNGSNKYVKVLTQTNEMQRETSLLSEAAYLQELEQASAFSEHARHLNACYCYPLSQMKRKNASSPGDSTAGAFSKNISNVSLSDKNYWVPYKMNHISFLQNMKDVDEASSGYPDLLLWRQTLSSSRLASEDIARDIFSVGCLLAELHLCRPLFDSISLKMYLEDGTLPGFLQELPPHVRILVEACIQTDWTRRPSAKILLESPYFPKTVKSSYLFLAPLQLVAKDEFCLRFAANLAKQGALRQMGAFATEMCATYCIPLIVNAVSDTEAEWAYILLEELMKCLTAQAVKILILPTIQKILQNTGYLHLKVSLLQDSFVREIWNRVGKQAYLETIHPLVLSNLYISPDKNSAASASVLLIGSSEEIGVPITINQTILPLVHCFGKGLCVDGIDVLVRIGGIFGESFIVKQMLPLLKNVVRSFIDVSCTNKTDPVQSWSSLALIDCMMTLDGLVAFLTEEVIVKELLEDISCIHIGVLKQKHMEIAVLQVAATNLFGICQRMGADLTALHILPKLKELFDELAFSQEISKGSATVSRNLKDTKLKTGGDFQIESRMDLVLLLYTSFASLLGIEKLRQCCATWLLLEQQLLRRHNWKWEHAGESSKNGSENNIARRPATAQGFTSEYNPAKLLLNGVGWSIPQSQGNRGTKNLIQRRPFKIHQSPVVMQEGMPNQVNHEPWFWFPSPATIWDGPAFLGRVGIQKDDLPWKIRASVIYSIRAHHGAVRSLAVHQDESTVFTAGIGQGYKGTVLKWELSRTNCLTGYYGHEEVVNDICILSSSGRVASCDGTIHIWNSQTGKQISVFAESETESGHPMNHSASVPKITSDQANVLNLNTLSNGMLSSAFDSSLYTSMHLLDSAETLVVGTGNGSLRFIDVARGQKLHIWRGDSNESSFHSLISAICSSGSNKAQAGGISTSPSLIATGLSSGHCKLFDVKSGNVVASWRAHDGFVTKLASPEEHLLISSSLDRTLRVWDLRMNLPSQPIIFRGHSDGISSFSIWGQDVISISRNRIGLLSLSKSAIETDGHHIIPQKLYVSSDNGMRSLSALSSISILPFSRLFLIGTEDGYLRICC 1660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05300 1660 SUPERFAMILY Protein kinase-like (PK-like) 201 291 IPR011009 -
Trre2g05300 1660 Gene3D - 1498 1660 IPR015943 GO:0005515
Trre2g05300 1660 PANTHER GH12955P 4 1660 - -
Trre2g05300 1660 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1531 1564 - -
Trre2g05300 1660 Gene3D Transferase(Phosphotransferase) domain 1 708 801 - -
Trre2g05300 1660 SMART Beach_2 349 581 IPR000409 -
Trre2g05300 1660 CDD Beach 351 581 IPR000409 -
Trre2g05300 1660 SMART WD40_4 1425 1462 IPR001680 GO:0005515
Trre2g05300 1660 SMART WD40_4 1625 1660 IPR001680 GO:0005515
Trre2g05300 1660 SMART WD40_4 1343 1380 IPR001680 GO:0005515
Trre2g05300 1660 SMART WD40_4 1465 1521 IPR001680 GO:0005515
Trre2g05300 1660 SMART WD40_4 1524 1562 IPR001680 GO:0005515
Trre2g05300 1660 SMART WD40_4 1297 1340 IPR001680 GO:0005515
Trre2g05300 1660 Gene3D - 1275 1497 IPR015943 GO:0005515
Trre2g05300 1660 Gene3D Transferase(Phosphotransferase) domain 1 197 292 - -
Trre2g05300 1660 ProSitePatterns Trp-Asp (WD) repeats signature. 1549 1563 IPR019775 -
Trre2g05300 1660 Gene3D BEACH domain 341 586 IPR036372 -
Trre2g05300 1660 Pfam WD domain, G-beta repeat 1526 1562 IPR001680 GO:0005515
Trre2g05300 1660 Pfam WD domain, G-beta repeat 1345 1380 IPR001680 GO:0005515
Trre2g05300 1660 SUPERFAMILY BEACH domain 338 581 IPR036372 -
Trre2g05300 1660 SUPERFAMILY WD40 repeat-like 1300 1658 IPR036322 GO:0005515
Trre2g05300 1660 SUPERFAMILY Protein kinase-like (PK-like) 719 806 IPR011009 -
Trre2g05300 1660 Pfam Beige/BEACH domain 351 561 IPR000409 -
Trre2g05300 1660 ProSiteProfiles BEACH domain profile. 337 607 IPR000409 -
Trre2g05300 1660 ProSiteProfiles Trp-Asp (WD) repeats profile. 1531 1564 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05300 Trre-Chr2 59844052 59852378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05300 1297 1563 Miscellaneous Gene Families AT5G08390 22.593 2.93e-08 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Trre2g05300 Beach 2.7e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05300 K17601 - gmx:100810047 2781.9