Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05295 ATGCCAGTGAGGCAAATGAAAGAAAGTTCAGAGCAACACATTGTGATCAAAACCAATTTGCAGAACCCTAAGAATCCACCAAAGGCTTCTCAAAATGGAAAAGCTCCACCACCATCATCATCACCACCACCACCACCAACTTCACCTCAACCAAAGAACAAAGGAAGAAGAAGAGGAAGAGGTGGAAGAAAATCTGATCAAGTAGAAATTTTGATGAGACCAAGTTCAAGACCATGTACTGCAATAACAAGTACTTCAAGCAAGTCTTTGAACTTTGCTCCTAGACCTGGTTATGGAACAGTTGGGACAAAATGTATTGTGAAGGCTAATCACTTCTTTGCAGAGTTACCAGACAAGGACTTAAACCAATATGATGTTACTATTACCCCTGAAGTGTCATCAAGAACAGTAAACAGGTCCATTATAGCTGAGCTTGTGAGGTTGTATAAAGAGTCTGACTTAGGGATGAGGCTTCCAGCTTATGATGGCAGAAAAAGTCTGTATACTGCAGGACAGTTACCCTTTTCTTGGAAAGATTTTAAGATTAAGCTTGTAGATGAAGAGGATGGAGTTAATTGCCCCAAAAGGGTAAAAGAGTACAGAGTGGTGATCAAGTTTGTTGCTAGAGCAAACTTGCATCATTTGGGCCAGTTTCTAGCTGGTAAGCGTGCGGATGCACCGCAGGAAGCACTTCAAATTCTTGATATTGTACTAAGAGAGTTATCAACTAAGAGGTATTGCCCCATTGGGAGGTCTTTCTTTTCACCTGATATAAGAAAACCACAGCGGCTTGGCGAGGGATTGGAATCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATCGATATGGCATCTGCTGCGTTCATCGAGCCTCTTCCAGTTGTAGAATTTGTTGGCCAGCTGCTAGGAAAAGACGTGCTGTCAAGGCCATTGTCGGATGCTGATCGAATCAAGATTAAGAAAGGCCTAAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTAAGAAGAAAATATCGTGTTTCAGGGTTAACTTCTCAACCAACAAGAGAACTTGTGTTTCCCGTTGATGAGAATTCAACTATGAAGTCGGTAGTTGAATACTTTCAAGAGATGTATGGTTTCACTATTCAATATACTCACCTTCCTTGCCTTCAAGTAGGCAACCAAAAGAAGGCTAATTACTTACCTATGGAGGCGTGCAAAATTGTTGAAGGGCAACGTTATACGAAAAGATTGAATGAGAAGCAAATTACTTCTCTATTGAAAGTTACTTGTCAGAGACCCCGCGATCGGGAAAATGACATTTTACAAACCATTCAACATAATGCTTATGACCAAGATCCTTATGCAAAGGAATTTGGGATTAACATCAGCGAGAAGCTAGCTTCTGTCGAAGCTCGAATTCTTCCTGCTCCTTGGCTTAAATATCACGAAAGTGGGAAAGAAAAGAACTGTTTACCCCATGTTGGTCAGTGGAATATGATGAATAAGAAAATGATTAATGGAATGGCTGTTAACCGGTGGGCATGCATAAATTTCTCACGGAGCGTGCAAGATAGTGTTGCTCGCACTTTTTGTAATGACCTCGCTTTAATGTGTAAAGTATCTGGGATGGAATTTAATTTGGAGCCTGTTATCCCTATCTACAATGCGAAGCCTGAGCAAGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCATCAAACAAAACTAAAGGAAAGGAATTGGAACTTTTGCTAGCAATATTGCCAGACAATAATGGTTCTCTATATGGTGATCTCAAGCGAATCTGTGAAACTGACCTTGGTTTAATTTCACAATGCTGTCTTACAAAGCATGTCTTCAAAATCACTAAACAGTATTTAGCTAACGTGTCTCTGAAGATCAATGTTAAGATGGGAGGTAGAAACACCGTTCTTCTTGATGCTGTAAGCTACAGAATACCATTGGTTAGCGACATACCAACGATAATTTTTGGAGCAGATGTTACTCACCCTGAAAATGGAGAAGACACTAGCCCCTCGATAGCAGCTGTAGTAGCGTCTCAAGATTGGCCCGAAGTAACAAAATATGCTGGTTTAGTATGTGCTCAAGCTCATAGACAAGAACTTATACAAGATTTATACAAAACTTGGCATGATCCTGTTCGTGGCACGGTTAGTGGTGGCATGATAAGAGATTTACTGATTTCCTATAGAAAAGCAACGGGACAAAAGCCGCTACGAATTATATTTTACAGGGATGGTGTAAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTGGACGCAATCCGGAAGGCATGTGCATCCTTAGAACCAAACTATCAGCCTCCAGTAACTTTCATCATTATACAAAAAAGACATCATACTCGGTTATTCCCAAACAATCATAGAGACAGGAGTAGCACAGATAAAAGTGGAAATATATTGCCTGGGACTGTTGTCGATACTAAAATTTGCCATCCAACGGAATTTGATTTTTATCTCTGCAGTCATGCTGGCATCCAGGGTACTAGTCGGCCAGCTCACTATCATGTTCTATGGGACGAAAACAATTTCACAGCAGATGGAATCCAATCTTTAACAAACAATCTTTGTTATACATATGCTAGGTGCACACGATCCGTATCCATTGTTCCTCCAGCATATTATGCACATTTAGCAGCCTTTCGAGCCCGTTTCTATATGGAACCAGAAGTGCAACAAGAGAATGGTTCGTCAGGTGATGGTAATTCTAGTCATAATAGTTCCAAGGGAACAACAAGAGCAGCTGGAGAATGTGGTGTTAAGCCATTACCAGCTTTAAAAGATAATGTTAAGAGAGTGATGTTTTACTGTTAA 2877 0.4053 MPVRQMKESSEQHIVIKTNLQNPKNPPKASQNGKAPPPSSSPPPPPTSPQPKNKGRRRGRGGRKSDQVEILMRPSSRPCTAITSTSSKSLNFAPRPGYGTVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSRTVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFSWKDFKIKLVDEEDGVNCPKRVKEYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRKPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKGLRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILQTIQHNAYDQDPYAKEFGINISEKLASVEARILPAPWLKYHESGKEKNCLPHVGQWNMMNKKMINGMAVNRWACINFSRSVQDSVARTFCNDLALMCKVSGMEFNLEPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSYRIPLVSDIPTIIFGADVTHPENGEDTSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISYRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIIIQKRHHTRLFPNNHRDRSSTDKSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPEVQQENGSSGDGNSSHNSSKGTTRAAGECGVKPLPALKDNVKRVMFYC 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05295 958 SUPERFAMILY Ribonuclease H-like 580 909 IPR012337 -
Trre2g05295 958 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 78 910 - -
Trre2g05295 958 MobiDBLite consensus disorder prediction 913 934 - -
Trre2g05295 958 FunFam protein argonaute 10-like 657 958 - -
Trre2g05295 958 SMART DUF1785_2 247 299 IPR014811 -
Trre2g05295 958 Pfam Mid domain of argonaute 497 574 IPR032473 -
Trre2g05295 958 CDD PAZ_argonaute_like 299 413 - -
Trre2g05295 958 Pfam Argonaute linker 2 domain 440 486 IPR032472 -
Trre2g05295 958 SUPERFAMILY PAZ domain 294 454 IPR036085 GO:0005515
Trre2g05295 958 MobiDBLite consensus disorder prediction 12 29 - -
Trre2g05295 958 MobiDBLite consensus disorder prediction 1 68 - -
Trre2g05295 958 SMART Piwi_a_2 588 909 IPR003165 GO:0003676
Trre2g05295 958 FunFam Argonaute 10 478 651 - -
Trre2g05295 958 ProSiteProfiles Piwi domain profile. 588 909 IPR003165 GO:0003676
Trre2g05295 958 Pfam N-terminal domain of argonaute 104 238 IPR032474 -
Trre2g05295 958 CDD Piwi_ago-like 458 908 IPR045246 -
Trre2g05295 958 SMART PAZ_2_a_3 304 436 IPR003100 GO:0005515
Trre2g05295 958 MobiDBLite consensus disorder prediction 913 936 - -
Trre2g05295 958 Pfam Argonaute linker 1 domain 248 297 IPR014811 -
Trre2g05295 958 MobiDBLite consensus disorder prediction 30 51 - -
Trre2g05295 958 Gene3D - 657 958 IPR036397 GO:0003676
Trre2g05295 958 Pfam Piwi domain 589 908 IPR003165 GO:0003676
Trre2g05295 958 FunFam Protein argonaute-2 293 419 - -
Trre2g05295 958 Pfam PAZ domain 326 430 IPR003100 GO:0005515
Trre2g05295 958 Gene3D - 478 651 - -
Trre2g05295 958 Gene3D paz domain 293 418 - -
Trre2g05295 958 ProSiteProfiles PAZ domain profile. 300 414 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05295 Trre-Chr2 59820216 59825750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05295 88 958 Eukaryotic Initiation Factors Gene Family AT5G43810 87.500 0.0 1638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05295 K11593 - gmx:100816999 1719.13