Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05293 ATGGAAGCTTCTCCTTCTTCGGTTTCCAACGAACGCGTCGCTTACAAGCTCAAAGGCTACTACGATTTAGCCACACAAGAAATCGATAAAGCTGTTAGGGCTGAAGAATGGGGATTGATCGACGACGCTATTCTTCACTACAGGAATGCCCATAGGATCCTTCTCGAAGCTAATTCAACTCCTGTTCCTTCCTTCATCACTTCAAGTGAGAAACAAAAGGCACAATCGTATCGTCAAAAGATATCAAAATGGCAGGGACAAGTATCCGAGAGATTGCAGGCTCTCAATAGACGAGCAGGTAGCTCAGTTGCCAATCAGAGCACCTCAAACCTTGCACCAACTGCTGCAGTTCCAACTAAACTATCAAATACTACAAAAAAAGTGTTACAAAAGAATCCTCAAAGAAAAAATGAGGTGAATAAAGTTCAAAACCCGAAATCTAGTCAAACATCTGGTGAAAATTATGACACAAAACTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTCCGGTGGGACGATGTTGGTGGCCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTCATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCGCCTGGCAATGGTAAGACCATGCTTGCCAAAGCAGTTGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACAGCAGCTTCCTTGACGTCAAAATGGGTTGGCGAAGGTGAAAAGCTTGTACGGACACTATTCAATGTAGCTACATCGAGACAGCCATCTGTAATTTTCATTGACGAGATTGATAGTATAATGTCAACAAGGACGACAAATGAAAATGAGGCCAGCAGACGATTAAAATCAGAATTCCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATCGTGATTGTAATTGGTGCGACCAATAAGCCACAGGAACTGGATGATGCAGTTCTCAGGAGACTGGTTAAGAGAATATACGTACCTTTACCAAATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAATAGAGATCTAGAGATGCTTGTAAAAGAAACTGAGGGATACTCTGGAAGTGATCTGCAAGCGTTGTGCGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTCCTAACATTCTTACTGTCAAGGCAAATCAGGTAAGAGGACTGAGGTATGAGGACTTCAAGAAAGCAATGGCTGTGATCAGACCAAGTTTAAACAAAAGTAAATGGGAAGAGCTTGAGAAGTGGAATGAAGAATTTGGCTCAAATTGA 1347 0.4202 MEASPSSVSNERVAYKLKGYYDLATQEIDKAVRAEEWGLIDDAILHYRNAHRILLEANSTPVPSFITSSEKQKAQSYRQKISKWQGQVSERLQALNRRAGSSVANQSTSNLAPTAAVPTKLSNTTKKVLQKNPQRKNEVNKVQNPKSSQTSGENYDTKLVEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEGEKLVRTLFNVATSRQPSVIFIDEIDSIMSTRTTNENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPNRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGPNILTVKANQVRGLRYEDFKKAMAVIRPSLNKSKWEELEKWNEEFGSN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05293 448 CDD MIT_spastin 17 95 - -
Trre2g05293 448 FunFam AAA-type ATPase family protein 344 426 - -
Trre2g05293 448 PANTHER AAA DOMAIN-CONTAINING 73 447 - -
Trre2g05293 448 Pfam Vps4 C terminal oligomerisation domain 414 446 IPR015415 -
Trre2g05293 448 Pfam AAA+ lid domain 368 399 IPR041569 -
Trre2g05293 448 ProSitePatterns AAA-protein family signature. 315 334 IPR003960 GO:0005524|GO:0016887
Trre2g05293 448 SMART AAA_5 209 345 IPR003593 GO:0016887
Trre2g05293 448 Pfam ATPase family associated with various cellular activities (AAA) 213 343 IPR003959 GO:0005524|GO:0016887
Trre2g05293 448 FunFam Spastin, putative 172 356 - -
Trre2g05293 448 Gene3D - 344 426 - -
Trre2g05293 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 445 IPR027417 -
Trre2g05293 448 Gene3D - 9 99 - -
Trre2g05293 448 SMART smart 17 94 IPR007330 -
Trre2g05293 448 CDD RecA-like_spastin 178 341 - -
Trre2g05293 448 Gene3D - 172 442 IPR027417 -
Trre2g05293 448 MobiDBLite consensus disorder prediction 99 154 - -
Trre2g05293 448 FunFam AAA-type ATPase family protein 10 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05293 Trre-Chr2 59799451 59804541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05293 153 398 Calmodulin-binding Proteins AT3G56690 42.063 4.90e-49 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05293 K13254 - gmx:100780946 771.926