Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05291 ATGAGTTTCTTGCAGGGAATCATTGATTCCTTTAACTCTGCCTTCTCTCCACAATCCATCGATCAAAATTCTTCTTCTTCTTCTTCTCAAACCAATCTCAATGCTTCTTCATCAATGGAAGCTTCTCCTTCTTCGGTTTCCAACGAACGCGTCGCTTACAAGCTCAAAGGCTACTACGATTTAGCCACACAAGAAATCGATAAAGCTGTTAGGGCTGAAGAATGGGGATTGATCGACGACGCTATTCTTCACTACAGGAATGCCCATAGGATCCTTCTCGAAGCTAATTCAACTCCTGTTCCTTCCTTCATCACTTCAAGTGAGAAACAAAAGGCACAATCGTATCGTCAAAAGATATCAAAATGGCAGGGACAAGTATCCGAGAGATTGCAGGCTCTCAATAGACGAGCAGGTAGCTCAGTTGCCAATCAGAGCACCTCAAACCTTGCACCAACTGCTGCAGTTCCAACTAAACTATCAAATACTACAAAAAAAGTGTTACAAAAGAATCCTCAAAGAAAAAATGAGGTGAATAAAGTTCAAAACCCGAAATCTAGTCAAACATCTGGTGAAAATTATGACACAAAACTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTCCGGTGGGACGATGTTGGTGGCCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTCATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCGCCTGGCAATGGTAAGACCATGCTTGCCAAAGCAGTTGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACAGCAGCTTCCTTGACGTCAAAATGGGTTGGCGAAGGTGAAAAGCTTGTACGGACACTATTCAATGTAGCTACATCGAGACAGCCATCTGTAATTTTCATTGACGAGATTGATAGTATAATGTCAACAAGGACGACAAATGAAAATGAGGCCAGCAGACGATTAAAATCAGAATTCCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATCGTGATTGTAATTGGTGCGACCAATAAGCCACAGGAACTGGATGATGCAGTTCTCAGGAGACTGGTTAAGAGAATATACGTACCTTTACCAAATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAATAGAGATCTAGAGATGCTTGTAAAAGAAACTGAGGGATACTCTGGAAGTGATCTGCAAGCGTTGTGCGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTCCTAACATTCTTACTGTCAAGGCAAATCAGGTAAGAGGACTGAGGTATGAGGACTTCAAGAAAGCAATGGCTGTGATCAGACCAAGTTTAAACAAAAGTAAATGGGAAGAGCTTGAGAAGTGGAATGAAGAATTTGGCTCAAATTGA 1461 0.4168 MSFLQGIIDSFNSAFSPQSIDQNSSSSSSQTNLNASSSMEASPSSVSNERVAYKLKGYYDLATQEIDKAVRAEEWGLIDDAILHYRNAHRILLEANSTPVPSFITSSEKQKAQSYRQKISKWQGQVSERLQALNRRAGSSVANQSTSNLAPTAAVPTKLSNTTKKVLQKNPQRKNEVNKVQNPKSSQTSGENYDTKLVEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEGEKLVRTLFNVATSRQPSVIFIDEIDSIMSTRTTNENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPNRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGPNILTVKANQVRGLRYEDFKKAMAVIRPSLNKSKWEELEKWNEEFGSN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05291 486 SMART AAA_5 247 383 IPR003593 GO:0016887
Trre2g05291 486 CDD RecA-like_spastin 216 379 - -
Trre2g05291 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 483 IPR027417 -
Trre2g05291 486 MobiDBLite consensus disorder prediction 136 191 - -
Trre2g05291 486 FunFam Spastin, putative 210 394 - -
Trre2g05291 486 Gene3D - 210 480 IPR027417 -
Trre2g05291 486 Gene3D - 382 464 - -
Trre2g05291 486 PANTHER AAA DOMAIN-CONTAINING 110 485 - -
Trre2g05291 486 MobiDBLite consensus disorder prediction 17 42 - -
Trre2g05291 486 CDD MIT_spastin 55 133 - -
Trre2g05291 486 SMART smart 55 132 IPR007330 -
Trre2g05291 486 Gene3D - 47 137 - -
Trre2g05291 486 Pfam Vps4 C terminal oligomerisation domain 452 484 IPR015415 -
Trre2g05291 486 FunFam AAA-type ATPase family protein 48 137 - -
Trre2g05291 486 Pfam AAA+ lid domain 406 437 IPR041569 -
Trre2g05291 486 ProSitePatterns AAA-protein family signature. 353 372 IPR003960 GO:0005524|GO:0016887
Trre2g05291 486 FunFam AAA-type ATPase family protein 382 464 - -
Trre2g05291 486 Pfam ATPase family associated with various cellular activities (AAA) 251 381 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05291 Trre-Chr2 59799337 59804541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05291 191 436 Calmodulin-binding Proteins AT3G56690 42.063 4.82e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05291 K13254 - gmx:100780946 795.808