Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05287 ATGGCCTCTAAAACTGAAAGCGAGAGTCCAACAGATACGCCACCATCACCGCCAAAGAATGTATACAAGGATCCTGATGATGGGCGGCAGCGGTTTTTGCTTGAACTGGAATTTGTTCAATGCCTTGCTAATCCTACCTACATCCACTATTTGGCTCAGAACCGATATTTTGAGGATGAAGCATTCATTGGGTACTTAAAGTATCTTCAATATTGGCAACGTCCTGAATATATTAAGTTTATTATGTATCCTCACTGCCTCTATTTTCTTGAGCTTCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCTACCAATAAGGAATTGGCGCATAGACAGCAGTTCTATTTCTGGAAGAACTATAGGAACAATCGGCTAAAACACATTTTACCAAAACCACTTCCAGAACCTACTGCTGCACTTCCTGCTTCAACTCAACCCCAGCCACCTGTGCCTGCACTGCCACCGCCACCACCACCACCTGCTGCTACAAATGTTGCTGTGACAACATCTTCTACTCAAGCTCCTTCTCCAATGCCATACGGTTCTGGTCTTGCAAAAAATGACCCGAGGAATCCTACAGTTGATAGAAGGAAAAGAAAGTGA 609 0.4384 MASKTESESPTDTPPSPPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNRLKHILPKPLPEPTAALPASTQPQPPVPALPPPPPPPAATNVAVTTSSTQAPSPMPYGSGLAKNDPRNPTVDRRKRK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05287 202 MobiDBLite consensus disorder prediction 166 180 - -
Trre2g05287 202 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Trre2g05287 202 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 18 119 IPR038089 -
Trre2g05287 202 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 3 202 IPR008831 GO:0003712|GO:0006355|GO:0016592
Trre2g05287 202 MobiDBLite consensus disorder prediction 133 202 - -
Trre2g05287 202 MobiDBLite consensus disorder prediction 1 24 - -
Trre2g05287 202 MobiDBLite consensus disorder prediction 136 165 - -
Trre2g05287 202 FunFam Mediator of RNA polymerase II transcription subunit 31 18 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05287 Trre-Chr2 59766582 59769542 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Trre2g05287 Med31 1.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05287 K15153 - gmx:100818057 321.242