Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05279 ATGTCTGCTCAATCTCACTCCATCCATAAACATAACAACAAAAAAAACATCACCCAATCACAAACTGAACCAGAAGATTCAACAATCACTGACGACAATAACAACAAGAAAAGCATTAACAATCTCAATCCCCCCGATCCCGAAAACAATGGGGTTTCGGGGAAGACAAAGACAAAGAAGAACAAGAACAAAAAGAAGCGTAAGGCTTCAGAGTTAGCGACAATGACGACAACCAATGAGGATGATAATGAGAATAGTTTAGAGCTTGTGGTTGAGCTGAATAAAGAAAAGAAAACTAAGAAGAAAAAAGCTAAGTCGGAAGAAAGTTTTGTGATGGAAAAGAAAGTGGAGGATCCTAATGCTGTTTCTAAATTCAAGATATCTGAACCTTTGAGGGAAAAGTTGAAGGAAAAGGGAATTGAATCATTGTTTCCTATTCAGGCTATGACTTTTGATATCATTCTTCATGGTTCTGATTTGGTTGGTAGAGCTCGCACTGGTCAGGGTAAAACTCTTGCCTTTGTATTGCCCATATTAGAATCTGTAACGAATGGTCCGGGAAAAGCATCAAGAAAGAGTGGCGATGGAAGGGCTCCAAGTGTTCTTGTGCTTTTACCTACTAGGGAATTGGCATGTCAGGTGAATGCTGATTTTGAAGTTTATGGTGGTGCATTGGGATTGACTTCTTGTTGTTTATATGGAGGAGCTCCATATCAACCTCAAAAAATGAAGCTTGAGAGAGGCGTGGATATTGTTATTGGCACACCGGGCCGCATAAAGGATCATATAGAGCGGGGAAGTATTGACCTAAGCCAACTAAAGTTCCGTGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTTGGTAAGGTGAAAAATGTAGGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGATTGGGTTAAGGATATTGCTAAAAGATTTCTTAAGCCAGATAAGGAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACTAGCGTAAGGCATATTATTCTTCCCTGTACGGGTTCTGCTAGGTCACAACTTATTCCAGATATTATTCGATGTTACAGCAGTGGAGGTCGGACAATTATATTCACCGAGACAAAGGAATCAGCATCTCAGCTCGCAGAGTTGTTTCCTGGAGCAAGAGCTCTCCATGGCGACATACAGCAAGCACAACGTGAGGTTACTTTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCCACAAACGTGGCAGCGCGGGGTCTCGATATTAATGACGTTCAGCTAATTATTCAGTGTGAGCCTCCAAAGGATGTTGAAGCCTATATCCATCGTTCCGGACGCACAGGAAGAGCAGGTAACACTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAATATATCTAAAATAGAGAAAGAGTCAGGCGTTAAATTTGAACACGTATCTGCCCCTCAGGCTAATGATATTGCCAAAGCAGTTGGTCGAGAAACTGCAGAAATGATTAACCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCCGAAGAACTTTTAAAAAACTCTGGTTTATCAGAAGTTGATTTACTTGCAAAAGCTCTAGCCAAGGCTGCTGGTTATACTGAGATCAAGAAAAGATCTCTTCTCACTTCTATGGAGAACTACGTTACATTACTTCTCGAGAACGGGAGACCTATCTTTACCCCAACTTTTGCATACAAAATGTTGAGGAGATTTTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTACTATTACTGCAGATGGAAGTGGTGTTGTTTTTGATGTACCAGCTGAACATTTAGATGCATATCTTGCTGGTAAAGAAAATTCCTCAGATGTAAGTTTAGAGGTGCTAAAAGCTTTGCCACGTCTGCAACAGAGAGATCAATCAAGAGGCGGAAGATTTGGTGACGGTGGTGGCCGCGGTGGGAGAAGTGGTGGCGGTGGAAGGAATGGTAGATTTTCAAGTGATAGGTTTTCGAACGGTGGTGGTAGAGGCCGTGGCAACTGGGGTGGGAAAAGATGGTGA 2100 0.4205 MSAQSHSIHKHNNKKNITQSQTEPEDSTITDDNNNKKSINNLNPPDPENNGVSGKTKTKKNKNKKKRKASELATMTTTNEDDNENSLELVVELNKEKKTKKKKAKSEESFVMEKKVEDPNAVSKFKISEPLREKLKEKGIESLFPIQAMTFDIILHGSDLVGRARTGQGKTLAFVLPILESVTNGPGKASRKSGDGRAPSVLVLLPTRELACQVNADFEVYGGALGLTSCCLYGGAPYQPQKMKLERGVDIVIGTPGRIKDHIERGSIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVKNVGKVQTLLFSATLPDWVKDIAKRFLKPDKETADLVGNTKMKASTSVRHIILPCTGSARSQLIPDIIRCYSSGGRTIIFTETKESASQLAELFPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPKDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIEKESGVKFEHVSAPQANDIAKAVGRETAEMINQVSDSVIPAFKSAAEELLKNSGLSEVDLLAKALAKAAGYTEIKKRSLLTSMENYVTLLLENGRPIFTPTFAYKMLRRFLPEEKVEAVKGLTITADGSGVVFDVPAEHLDAYLAGKENSSDVSLEVLKALPRLQQRDQSRGGRFGDGGGRGGRSGGGGRNGRFSSDRFSNGGGRGRGNWGGKRW 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05279 699 Gene3D - 357 571 IPR027417 -
Trre2g05279 699 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 277 285 IPR000629 -
Trre2g05279 699 Gene3D - 572 643 - -
Trre2g05279 699 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 333 IPR014001 -
Trre2g05279 699 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 63 534 - -
Trre2g05279 699 Pfam Helicase conserved C-terminal domain 367 465 IPR001650 -
Trre2g05279 699 CDD DEADc 131 328 - -
Trre2g05279 699 Pfam GUCT (NUC152) domain 554 649 IPR012562 GO:0003723|GO:0004386|GO:0005524
Trre2g05279 699 MobiDBLite consensus disorder prediction 1 83 - -
Trre2g05279 699 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 504 IPR001650 -
Trre2g05279 699 Gene3D - 49 332 IPR027417 -
Trre2g05279 699 Pfam DEAD/DEAH box helicase 144 321 IPR011545 GO:0003676|GO:0005524
Trre2g05279 699 SMART helicmild6 384 465 IPR001650 -
Trre2g05279 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 477 IPR027417 -
Trre2g05279 699 CDD GUCT_RH7_like 561 646 - -
Trre2g05279 699 CDD SF2_C_DEAD 348 474 - -
Trre2g05279 699 SMART ultradead3 139 351 IPR014001 -
Trre2g05279 699 FunFam DEAD-box ATP-dependent RNA helicase 7 571 643 - -
Trre2g05279 699 SUPERFAMILY RNA-binding domain, RBD 558 641 IPR035979 GO:0003676
Trre2g05279 699 MobiDBLite consensus disorder prediction 650 699 - -
Trre2g05279 699 MobiDBLite consensus disorder prediction 14 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05279 Trre-Chr2 59686185 59690002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05279 104 471 Eukaryotic Initiation Factors Gene Family AT3G19760 29.412 3.93e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05279 K16911 - gmx:100820207 901.738