Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05271 ATGGCTGAAGAAAATCAGCATAAAATATTGGTTACTTCGGAAAATGATGAAAAGAAGATTATTCGTAGGGAAGTTGAAAAACAAAGAAGAATGCAAATGTCTATTCTATGTTCATCACTCCGTTCTTCACTACCTTTAGATCTCATCAAGGGAAAGCGTTCAGTATCAGATCACATAGGTGAGGCTGCAAATTATGTTCAATTTTTGAAACAAAACATTAATGAACTTGAAACAAAAAGGGATAAGCTCAAAGATATGGCTATTTTAAGTATGGTTGAGACTGGAAAAGAATTATCATCAGATCCTTCAAGTTTAGTGAAGTGTGTCAAGATTAATCTCATTCAAGGTGGGGTTGAAATTGTAATATGTAATGGTTTCGAGGATTGTAGTTCGCGTTTATCGGATTTGATGAAAATAATACTTGAAGAAGGATGTGATGTTGTTCATTGTGTTACCAACCAAGTAAATGGGAAGATTTTTCATACTATTAAATCTGAGGTGAAGGACTTGACATGCCTTAATCTTGCTCGGCTGCAAAACAAACTGGATCGTGCAATCTTATTGTCAAGGTAA 573 0.3455 MAEENQHKILVTSENDEKKIIRREVEKQRRMQMSILCSSLRSSLPLDLIKGKRSVSDHIGEAANYVQFLKQNINELETKRDKLKDMAILSMVETGKELSSDPSSLVKCVKINLIQGGVEIVICNGFEDCSSRLSDLMKIILEEGCDVVHCVTNQVNGKIFHTIKSEVKDLTCLNLARLQNKLDRAILLSR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05271 190 Gene3D - 10 94 IPR036638 GO:0046983
Trre2g05271 190 Coils Coil 59 86 - -
Trre2g05271 190 CDD bHLH_AtORG2_like 18 84 - -
Trre2g05271 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
Trre2g05271 190 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 14 172 - -
Trre2g05271 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 85 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05271 Trre-Chr2 59619823 59620983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05271 23 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 35.088 4.25e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05271 - - ccaj:109790384 248.054