Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05268 ATGTCCTTGAAATGTTTATGTTGTTTTCTTTCTAATGAAGAAGAGCATAGCCAAAGAAGGAGTGTTGATGACAAAAAAAATATTGTTAGGGACTATCCATGGGACAGATACACCTTGAAGGAATTGCTTCGTGCAACAAACAACTTTCATCAAGATAACAAGATTGGAGAAGGTGGATTTGGAAGTGTATATTGGGGTCAAACAAGTAAAGGCGTCGAGATTGCTGTGAAGAGGTTGAAGACAATAACTGCAAAAGCAGAGATGGAATTTGCAGTTGAAGTGGAAGTACTTGGAAGGGTGAGGCATAGGAATTTGTTAGGATTGAGGGGATTCTATGCAGGAGGAGAAGAAAGATTAATTGTGTATGATTACATGCCTAATCATAGTTTACTCACTCATTTACATGGTCAACTTGCCTCTGATTGTTTACTAGATTGGTCTAGAAGAATGAGCATAATAATTGGTGCAGCTGAAGGTTTAGCGTATTTGCACCATGAGGCAAATCCTCACATAATTCATAGAGACATAAAAGCAAGCAATGTTCTTCTAGACACAGAGTTTCAAGCCAAGGTAGCTGATTTTGGTTTTGCAAAGCTAATACCAGCAGGTGTAAGCCACCTAACAACAAGAGTTAAGGGCACACTTGGTTATTTAGCACCAGAATATGCTATGTGGGGTAAAGTTTCTGAGAGTTGTGATGTTTATAGTTTTGGAATTTTGCTTTTGGAAATTATAAGTGCTAAAAAACCAATTGAAAAACTACCTGGTGGAATAAAAAGAGACATTGTTCAATGGGTCACACCTTATGTACAAAAGGGTGTTTTTAAGCATATTGCTGATCCAAAATTGAAAGGGAATTTTGATTTAGAACAATTAAAATCAGTGATTATGATTGCTTTGAAGTGCACTGATGGTAGTCCTGATAAAAGGCCTAGTATGGAAGAGGTAGTGGAATGGCTTAGGGATGGTGTTTCAAAGGGTAAAAAAGATATTTCAAATTTGAGTAACAATAAGGGTGATGATGAAGGAAATGATGAAAACTATGAAGAGTTTGTAACAATGCAAACCAATAATTTGAAAATAATAAGTGATAATGATAGGCGTAAAATGAGATGA 1116 0.362 MSLKCLCCFLSNEEEHSQRRSVDDKKNIVRDYPWDRYTLKELLRATNNFHQDNKIGEGGFGSVYWGQTSKGVEIAVKRLKTITAKAEMEFAVEVEVLGRVRHRNLLGLRGFYAGGEERLIVYDYMPNHSLLTHLHGQLASDCLLDWSRRMSIIIGAAEGLAYLHHEANPHIIHRDIKASNVLLDTEFQAKVADFGFAKLIPAGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKLPGGIKRDIVQWVTPYVQKGVFKHIADPKLKGNFDLEQLKSVIMIALKCTDGSPDKRPSMEEVVEWLRDGVSKGKKDISNLSNNKGDDEGNDENYEEFVTMQTNNLKIISDNDRRKMR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05268 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 322 - -
Trre2g05268 371 Pfam Protein kinase domain 49 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05268 371 ProSiteProfiles Protein kinase domain profile. 49 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05268 371 SUPERFAMILY Protein kinase-like (PK-like) 33 323 IPR011009 -
Trre2g05268 371 SMART serkin_6 49 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g05268 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Trre2g05268 371 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Trre2g05268 371 FunFam PTI1-like tyrosine-protein kinase At3g15890 125 338 - -
Trre2g05268 371 Gene3D Transferase(Phosphotransferase) domain 1 125 334 - -
Trre2g05268 371 Gene3D Phosphorylase Kinase; domain 1 10 124 - -
Trre2g05268 371 FunFam PTI1-like tyrosine-protein kinase At3g15890 21 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05268 Trre-Chr2 59598088 59600321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05268 36 326 Receptor kinase-like Gene Family AT1G60800 45.578 4.99e-83 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Trre2g05268 Pkinase 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05268 - - gmx:100817283 593.964