Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05260 ATGATCAGCTTGAACAAAATCATTGAGAAGTATCGCCAATGTTGCTTCAATAATATGTCGAATAATGACAACTTGGGAGAACACGAGTCACAGAGCTTACACGAGGAGCTTTTGATGCTAAGAGTCAAGCATGAATCTCTAGCGCGGACTCAAAGGATTTTTTTGGGTGAAGAACTCAATGCACTTGGCATAAAAGATTTGCAGAGTATAGAGAAACAACTGGAGAGAACGCTTGCACAAGCTCGAAAGCACCAAATGCAAAAGATGGTGGCAAAAGTTGATGAATTACGCGAGGAGGTGCACAAGGTGGAGGAGGTCAACAAACAATTAAAATCCGAGGAAAGAGGTATAACCACCAATATTTGTGACAATACGACTGACAATACCATCGCCAATTTGCTTGATGCACAAGCCAATCAGTTTGATTATGGGACAACAAGTCGGTTTGGGCACCAACAAGCTGCATCAATAGGGCAGGCAACAGATACGAGCATTGACATTGATAGAGGACAAAGCAGTCACAACAAGACCAATGGATGGATGAATTTTTGA 552 0.4203 MISLNKIIEKYRQCCFNNMSNNDNLGEHESQSLHEELLMLRVKHESLARTQRIFLGEELNALGIKDLQSIEKQLERTLAQARKHQMQKMVAKVDELREEVHKVEEVNKQLKSEERGITTNICDNTTDNTIANLLDAQANQFDYGTTSRFGHQQAASIGQATDTSIDIDRGQSSHNKTNGWMNF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05260 183 Coils Coil 64 113 - -
Trre2g05260 183 ProSiteProfiles K-box domain profile. 30 120 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre2g05260 183 Pfam K-box region 26 112 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05260 Trre-Chr2 59527264 59530998 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05260 2 111 MADS-box Gene Family AT2G45650 38.182 2.17e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05260 K09264 - gmx:100802197 163.696