Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05253 ATGAACGAAATTCGAGGGGGATCAACATACGTGGGGCTCTTCTCCATTGTTAGGTGCTTGAAAGCTTCAAAACACAGTCAACGTATCAGAAACTCTGCCTCTCTGCAAAAGACACAGATGGAAGTGAATCCTAATCCTAACGGCGGCGCTGGTTTCAGCGAAGAAAACGGCACACAGAGTACCGATATGTCTCCGTCGGAGACTACGGAGGCGGCGGTCATGAAAGAAGAGTTGACGGAAGCTGATAACCACAACCGTCAAGAGTCGCTTGCGGTGGGTGTTGTTCCGATGCCGATGACAATGGCAGCTCCGAAGGCGAAGAGACAATCAAAGGACCGTCACACGAAGGTGGACGGACGTGGTCGGAGAATCAGAATGCCGGCACTCTGCGCCGCGAGGATCTTCCAGCTGACACAGGAGCTTGGTCACAAGTCTGACGGAGAAACAATACGGTGGTTACTTGAACAAGCTGAAACTGCTATCATTGAAGCCACTGGCACTGGAACTGTCCCTGCCATCGCTGTTTCAGTCGGTGGCGTGCTGAAAATTCGAACTACATCGGCGGCGAGACCCGACGATGAAGATACTTCAAGGAAACGAAGGAAGAGACCATCAAACAGTGAATTTGTTGATGTGAATGATCAAGTTTCAATGTGCTCTGGTTTAGCACCAATTGCTCAAACACCATACGGTGGCGCTGCCGTCAACGGTGGTGAAAATGGTGGTGCTGGTGGTTTGGTTCCTTTATGGCCTGTGGTGAGTAATGGTGTGTCTAATCAAACAGGGCCATATTTCATGTTCCCACATTCAGTTATGAATCAACCACAGTTTTGGGCTATTCCTGCTGCACCTTTTTTCAATGTCCAAAATAGACCCATTTCAGATTATGTTTCTGTTATGCAAATGCCACAAAATCAACAACCTTCAAATGCTTCTGCTAATGCTAATTCTTCATCTACTTTGGTTCCTTGTTTGAACTCAGCAATTTCAACAACTTGTTCTGCTGCTTCATCATCTTCTGCAGGAACTCCCCAAATGCTTAGGGATTTCTCTTTGGAATTATATGACAAGAAAGAGCTACAGTTTATGGGTTGTTCTTCTGCAAATTTAGGATCACCTCCTACTTCAAACCCTTCAATTGAAGCACTTAAGTTACTAGGAAAAAAATATGCTTAG 1176 0.4609 MNEIRGGSTYVGLFSIVRCLKASKHSQRIRNSASLQKTQMEVNPNPNGGAGFSEENGTQSTDMSPSETTEAAVMKEELTEADNHNRQESLAVGVVPMPMTMAAPKAKRQSKDRHTKVDGRGRRIRMPALCAARIFQLTQELGHKSDGETIRWLLEQAETAIIEATGTGTVPAIAVSVGGVLKIRTTSAARPDDEDTSRKRRKRPSNSEFVDVNDQVSMCSGLAPIAQTPYGGAAVNGGENGGAGGLVPLWPVVSNGVSNQTGPYFMFPHSVMNQPQFWAIPAAPFFNVQNRPISDYVSVMQMPQNQQPSNASANANSSSTLVPCLNSAISTTCSAASSSSAGTPQMLRDFSLELYDKKELQFMGCSSANLGSPPTSNPSIEALKLLGKKYA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05253 391 ProSiteProfiles TCP domain profile. 110 164 IPR017887 -
Trre2g05253 391 MobiDBLite consensus disorder prediction 30 68 - -
Trre2g05253 391 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 70 358 IPR005333 GO:0003700
Trre2g05253 391 MobiDBLite consensus disorder prediction 30 72 - -
Trre2g05253 391 Pfam TCP family transcription factor 109 189 IPR017887 -
Trre2g05253 391 MobiDBLite consensus disorder prediction 186 210 - -
Trre2g05253 391 MobiDBLite consensus disorder prediction 187 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05253 Trre-Chr2 59482017 59485259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05253 100 363 TCP Transcription Factor Family AT5G51910 51.825 6.23e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre2g05253 TCP 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05253 - - tpra:123922458 569.696