Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05243 ATGGATGGCAACAACAACAACGTTCCTGCAGTACCACCACCACCACCACCACCTATACAAATCCCTAATGTAGTCACTTCTTCATCTACATCAGCACCAACAACTCCATCATCTCCGGCAACGTCAGGAGTAGTCCTCGGGGGAAGATACCGAGGAACCCGTTGCCGGAGTGGAAAATGGGTATCTGAGATACGTGAGCCACGTAAAACAAAACGCATTTGGTTAGGAACATACCCTACAGCTGAAATGGCTGCAGCTGCTTATGATGTTGCTGCTCTTGCTTTAAAAGGACCTGAAACTACTCTTAACTTTCCTGATTTAATTTCTTCTTACCCTATTCCTGCTTCATTGTCTTCTACTGATATTCGTGCTGCTGCTGAAGCTGCTGCACAAACCAGAATCATGAGAGTCACTCCTCCTCCTCCTCCTCAACAACAACAACAACAACAAAACCCTTCATCTTCTGGTTTTGAAGGATCTTCTTCAGAAGCTAGTGGAGTAGTAGTGCAAGAATATATTGATGAAGATGAGTTATTGAATATGCCAAATTTGTTGGATGAAATGGCTAGAGGAATGCAGGTTAGTCCACCAAGGATGAGTTCATTTTCTAATTATTCATCCGATGATTCGCCTCGCAATTCTGATGGAGGAGATAATCTTTGGAGTTATAATTTTTGA 678 0.4292 MDGNNNNVPAVPPPPPPPIQIPNVVTSSSTSAPTTPSSPATSGVVLGGRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPTAEMAAAAYDVAALALKGPETTLNFPDLISSYPIPASLSSTDIRAAAEAAAQTRIMRVTPPPPPQQQQQQQNPSSSGFEGSSSEASGVVVQEYIDEDELLNMPNLLDEMARGMQVSPPRMSSFSNYSSDDSPRNSDGGDNLWSYNF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05243 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 33 199 - -
Trre2g05243 225 MobiDBLite consensus disorder prediction 1 49 - -
Trre2g05243 225 MobiDBLite consensus disorder prediction 189 225 - -
Trre2g05243 225 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Trre2g05243 225 MobiDBLite consensus disorder prediction 136 169 - -
Trre2g05243 225 FunFam Ethylene-responsive transcription factor 2 49 106 - -
Trre2g05243 225 SUPERFAMILY DNA-binding domain 50 106 IPR016177 GO:0003677
Trre2g05243 225 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Trre2g05243 225 MobiDBLite consensus disorder prediction 148 167 - -
Trre2g05243 225 ProSiteProfiles AP2/ERF domain profile. 40 105 IPR001471 GO:0003700|GO:0006355
Trre2g05243 225 MobiDBLite consensus disorder prediction 23 42 - -
Trre2g05243 225 SMART rav1_2 49 111 IPR001471 GO:0003700|GO:0006355
Trre2g05243 225 Pfam AP2 domain 54 97 IPR001471 GO:0003700|GO:0006355
Trre2g05243 225 MobiDBLite consensus disorder prediction 8 22 - -
Trre2g05243 225 MobiDBLite consensus disorder prediction 196 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05243 Trre-Chr2 59393339 59394016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05243 50 223 AP2-EREBP Transcription Factor Family AT5G52020 54.857 3.71e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g05243 AP2 2.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05243 - - psat:127091780 259.225