Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g05241 | ATGAAAGCTATTTTCTGTGGAAATTTTGAATATGATTGCCGGGAGTCTGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGGCTGGATTTGCTTTTATCTATATGGAAGATGAGAGAGATGCTGATGCTGCAATTCGTGCTCTCGATCGGATAGAATTTGGTCGAAAGGGGCGCAGACTTCGTGTAGAATGGACAAAGGGAGAACGTGGCATCCGAAGGCCTGCTGAGCGTCCAAAAAGATCTTCAGCTAATGCAAGACCATCAAAGACCTTATTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCATTTGTTCAGTATGATTCAGAAGATGATGCTTCCAAAGCACTGGAAGCTACAAATAATAGCAAGTTGTTGGATCGGGTTATTTCAGTTGAATTTTCTTCTAAAGATGATGACGCTAGGAGAAATGGACATAGCCCGGAGAGGGGCCGTGATCGTCAACGTGACAGAAGCCGTGATGGAAGGCGATCACCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCATGGACCCAGTCCATATAAGAGAGAGAGGAGCAGCCCTGACTATGGGCGTGGCAACAGCCGTAGTAGAAGCCCCCCCTATAAGCGGGAGAGGAGTAGCCCTGCTTATGGGCGTCGAAGCATTAGTCCTTACAGAAGAGAGAGGGATGGTTCTGAGCCTGTTCGTGGCACCAGCCGCAGTCCTTATCACAAAGAGCGGGGGAGAACTGGCCGGTCTCCCTCTCAGAGTCCCGAAGAAGGAGAGAGGATAGACCTTCGAAATGATCACGGATCTGACCATAGTCCTTATGATACTTTGAAGGATAGCCCTGAAAATGGCCATCACCGGAGGCATAGTCCTGATGCAATAAGGAACCCCAGCCCCTACAATGATTCTAGAAGAAGCCCTAGTCCTGATGCAAAAGGGAACCCCAGTCCATACAATGATTATGGAGGGAGCCCAAATACTGTGCCTGAACCTAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATGCATGAGCAATATCGCAGCCAGAGCCAGTCACCCCCTGCAGAAGAATGA | 1173 | 0.4808 | MKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDADAAIRALDRIEFGRKGRRLRVEWTKGERGIRRPAERPKRSSANARPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYDSEDDASKALEATNNSKLLDRVISVEFSSKDDDARRNGHSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGHGPSPYKRERSSPDYGRGNSRSRSPPYKRERSSPAYGRRSISPYRRERDGSEPVRGTSRSPYHKERGRTGRSPSQSPEEGERIDLRNDHGSDHSPYDTLKDSPENGHHRRHSPDAIRNPSPYNDSRRSPSPDAKGNPSPYNDYGGSPNTVPEPRDSPNYGGPESPMHEQYRSQSQSPPAEE | 390 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g05241 | 390 | FunFam | Serine/arginine-rich splicing factor RS31 | 1 | 85 | - | - | |
Trre2g05241 | 390 | MobiDBLite | consensus disorder prediction | 376 | 390 | - | - | |
Trre2g05241 | 390 | MobiDBLite | consensus disorder prediction | 232 | 324 | - | - | |
Trre2g05241 | 390 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 97 | 338 | - | - | |
Trre2g05241 | 390 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 169 | IPR035979 | GO:0003676 | |
Trre2g05241 | 390 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 74 | IPR000504 | GO:0003723 | |
Trre2g05241 | 390 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 96 | 167 | IPR000504 | GO:0003723 | |
Trre2g05241 | 390 | MobiDBLite | consensus disorder prediction | 327 | 354 | - | - | |
Trre2g05241 | 390 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 98 | 160 | IPR000504 | GO:0003723 | |
Trre2g05241 | 390 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 62 | IPR000504 | GO:0003723 | |
Trre2g05241 | 390 | SMART | rrm1_1 | 3 | 70 | IPR000504 | GO:0003723 | |
Trre2g05241 | 390 | SMART | rrm1_1 | 97 | 163 | IPR000504 | GO:0003723 | |
Trre2g05241 | 390 | MobiDBLite | consensus disorder prediction | 167 | 390 | - | - | |
Trre2g05241 | 390 | Gene3D | - | 86 | 180 | IPR012677 | - | |
Trre2g05241 | 390 | Gene3D | - | 1 | 85 | IPR012677 | - | |
Trre2g05241 | 390 | MobiDBLite | consensus disorder prediction | 167 | 225 | - | - | |
Trre2g05241 | 390 | FunFam | Serine/arginine-rich splicing factor RS31 | 88 | 178 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g05241 | Trre-Chr2 | 59375241 | 59378217 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g05241 | 4 | 170 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 22.222 | 1.15e-09 | 58.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g05241 | K12893 | - | gmx:100796509 | 580.867 |