Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05228 ATGGGATTTCTCCGGCGACTCTTTGGCGCCAAAAAACCCTCTGATGGGTCGGGTACCAAATCTGATAAAGACAATAACAAGAAAAAATGGAGTTTCGTCAAACAAAGCGGTAGAAAAAAGTCACTCCCGCCACCTCCGCCGCCGCAACCAACCACCTTCACTCAATTTGACTCCTCTACTTCCTTAGAACGCAACAAACATGCAATTGCTGTCGCCGCCGCTACCGCAGCAGTTGCCGAGGCTGCTCTAACCGCCGCACGTGCTGCTGCTGAGGTGGTTAGACTGACAAGTAACGGTGTCGGTGGAAGTAGTACCGTAAGCAGACCCAAAACGCGAGTTCACCAGACACGGTTGCCGGTAGAGACCGCCGCCGTTAGAATACAATCAGCTTTCCGCGGTTATTTGGCTAGGAGGGCGTTGAGAGCACTTAAATCATTAGTAAAGTTGCAAGCATTGGTTAGGGGCCACATAGTGAGAAAGCAAAGTGCAGATATGCTTAGGCGTATGCAAACATTGGTTCGTCTCCAGACACAGGCACGTGCAAGTCGTGCCCACTTATCATCATCAGATAATTTGCATTCCTTTAAGTCTTCACTTTCTCATTACCCTGTCCCTGAAGAATATGAGCATCCACATCCTGTCTACGGTACAAAATTCGGTGGATCTTCCATCCTCAAGAGATGTAGTTCCAATGCAAATTTTAGGAAGATTGAGTCAGAGAAACCACGTTATGGTTCCAATTGGCTAGACCATTGGATGCAAGATAACTCAAAGAATCGACAAGTCGATAATCAAAAAAGCGACAAGATTCTCGAAGTAGATACTTGGAAGCCACATGATTCTCCATCAAAACATTCAACAAAACCTCAAAATCAAAGTCTCTCACGAACCGCAGATAATAGTCCACAAACATATTCAGCTTCTTCAAAAACTGGAAATGGTGTAAGGAGAGGTACACCCTTTACACCTACAAGGAGTGAGTGTTCATGGAGTTTCTTAGGTGGATACTCTGGTTACCCCAATTACATGGCAAATACTGAATCTTCTAAAGCTAAGGTTAGATCACAAAGTGCACCAAGACAAAGACTTGAGTTTGAGAGATGCAGTTCAACTAGAAAACCTTTTCAAGGATTTTGGGATGTGGGGCCTACTAATTCAGACCAAGATTCTGAATATGAATATTCAAGGAGCAACAAAGTCTCACCTGCTTTGAGTCGTTTTAATAGAAATGGAAGTAGTAATAATTTAAGGTGA 1254 0.441 MGFLRRLFGAKKPSDGSGTKSDKDNNKKKWSFVKQSGRKKSLPPPPPPQPTTFTQFDSSTSLERNKHAIAVAAATAAVAEAALTAARAAAEVVRLTSNGVGGSSTVSRPKTRVHQTRLPVETAAVRIQSAFRGYLARRALRALKSLVKLQALVRGHIVRKQSADMLRRMQTLVRLQTQARASRAHLSSSDNLHSFKSSLSHYPVPEEYEHPHPVYGTKFGGSSILKRCSSNANFRKIESEKPRYGSNWLDHWMQDNSKNRQVDNQKSDKILEVDTWKPHDSPSKHSTKPQNQSLSRTADNSPQTYSASSKTGNGVRRGTPFTPTRSECSWSFLGGYSGYPNYMANTESSKAKVRSQSAPRQRLEFERCSSTRKPFQGFWDVGPTNSDQDSEYEYSRSNKVSPALSRFNRNGSSNNLR 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05228 417 MobiDBLite consensus disorder prediction 274 322 - -
Trre2g05228 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 165 IPR027417 -
Trre2g05228 417 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Trre2g05228 417 MobiDBLite consensus disorder prediction 376 417 - -
Trre2g05228 417 Gene3D - 118 173 - -
Trre2g05228 417 Pfam Protein of unknown function (DUF4005) 301 365 IPR025064 -
Trre2g05228 417 ProSiteProfiles IQ motif profile. 121 148 IPR000048 GO:0005515
Trre2g05228 417 SMART iq_5 142 163 IPR000048 GO:0005515
Trre2g05228 417 SMART iq_5 119 141 IPR000048 GO:0005515
Trre2g05228 417 MobiDBLite consensus disorder prediction 16 31 - -
Trre2g05228 417 MobiDBLite consensus disorder prediction 1 53 - -
Trre2g05228 417 MobiDBLite consensus disorder prediction 381 417 - -
Trre2g05228 417 MobiDBLite consensus disorder prediction 285 322 - -
Trre2g05228 417 Pfam IQ calmodulin-binding motif 123 141 IPR000048 GO:0005515
Trre2g05228 417 Pfam IQ calmodulin-binding motif 144 161 IPR000048 GO:0005515
Trre2g05228 417 PANTHER IQ-DOMAIN 5-RELATED 22 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05228 Trre-Chr2 59293209 59298656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05228 1 377 IQD Protein Family AT5G62070 48.371 1.69e-64 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05228 - - gmx:100783694 428.328