Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05225 ATGGGGTTTGAGAGTGTCAATAGTTCCTTTAAAGTTGCAAGACTTGTCACTGATTTTTCTATACCCTTTTCCAGTTCAATGCAAAATTCTTCTACCTTCTTCTCATCTCAAAGAAAAATGGAGGGTCAGAGTGAGATTGGTCTCACTAGTGAAAGTTTAGATACTAGTATGATAGGGAGAATGAGGGAGGATGAGTATGAAAGCCGGTCCGGAAGCGATAACTTTGATCTTGAAGGAATATCTGGTGATGATCAGGATGGTGATGATGGTCAGCGCAAGAGGAAGAAGAGATATCATAGACACACTCCAAATCAAATTCAAGAGCTTGAATCTTTCTTCAAAGAGTGTCCTCATCCTGATGAAAAGCAAAGGTTGGATCTTAGTAAGAGACTTGGCTTGGAAAATAAACAAGTCAAATTCTGGTTTCAGAATCGTCGAACCCAAATGAAGACTCAGCTGGAAAGACATGAGAACATAATGCTTAGGCAAGAAAATGACAAGCTAAGAGGGGAGAATAGTATGATGAAAGAAGCAATGGTGAATCCAATATGTAACAACTGTGGTGGACCAGCAATTCCTGGCCAAATTTTGTTCGAAGAGCACCAGATTAGAATTGAAAATGCTCGTCTAAAAGATGAATTGAACCGTATATGTGCCTTAACAAACAAGTTCCTCGGCAAACCAATATCTTCAATGGCTAATCCCATGTCTCTACCAACCTCGAATTCTGGTCTTGAACTTGGTATTGGAAGGAATGGTTTCGGTGGCGGTTCAAGCTCTCACGGCGCTTCTTTACCAATGGGACTTGATCTTGGAGATGGTCCTGCGGTGCCTGGTCTTAGGTCGCCAATGGGATTGATGGGGAATAGTAATGATGTTCAGCTCGAGAGATCGGTGCTTATAGATCTTGCATTGGCTGCTATGGATGAATTATTAAAGATGGCTCAGACAGATAATCCTATTTGGATTAAGGGATTGGATGGAGAAAGGGACATATTGAATCATGAAGAGTATTCAAGGTCGTTTTCTTCTTGTATTGGTCCCAAACCCACCGGCTTTGTCTCTGAAGCTACAAGAGAAACTGGCATAGTAATAATTAACAGTTTAGCCCTGATGGAAACTTTGATGGATGCGAATCGATACGCAGATATGTTTCAGTCATTGATAGCTAGATCGGTCAATCTTGATGTTTTATCGGGTGGCATCGGTGGAACAAGAAATGGTGCTATACATTTGATGCATGCCGAGGTTCAATTGCTTTCACCACTAGTCCCGGTTCGTCAAGTAAAAATCCTTCGGTTCTGTAAGCAGCATGCAGAAGGTGTTTGGGCTGTGGTTGATGTTTCTGTTGAGATCGGTCACGATGCTGCTAATGCTCAACCTTTCATTAGCTGTAGAAGGCTTCCCTCTGGCTGTATTGTGCAAGATATGCCAAATGGTTACTCCAAGGTCACTTGGATTGAGCATTGGGAGTATGATGAGAGTGTTGTCCACAACCTTTATCGTCCATTGATTATTTCTGGTTCTGGATTCGGCGCTCATAGATGGATCGCCACCCTCCAAAGGCAGTGTGAAGGCTTGGCTATCCTCATGTCCTCTTCCATCTCAAGCGATGATCACACTGCATTGAGCCAAGCTGGTAGAAGAAGCATGTTGAAGCTGGCACAACGCATGACCAACAACTTCTGTTCCGGTGTTTGTGCTTCATCTGCTAGAAAATGGGACAGCCTTCAAATGGGGACCTTGAGTGATGACATGAGAGTTATGACTAGGAAAAATGTTGATGATCCCGGCGAGCCTCCTGGTATTGTGCTCAGCGCTGCTACATCTGTTTGGATGCCAGTTTCACGGCAAAGGCTGTTTGATTTTCTGCGTGATGAACGGCTTAGAAGCGAGTGGGACATTTTGTCTAATGGTGGACCAATGCAAGAGATGGTTCACATTGCCAAAGGACAAGGACAAGGAAATTGTGTTTCTCTTCTCCGTGCTAATGCTGTTAATGCGAACGATAGCAGCATGTTGATTCTGCAAGAGACATGGATGGATACATCGTGCTCTGTCGTGGTGTACGCGCCTGTTGACGGACAATCATTGAACGTGGTGATGAGTGGCGGAGATTCTGCATATGTGGCACTCTTGCCTTCAGGCTTTGCCATTGTTCCTGACGGCAATAACTCCTCTGGCTATGGTGCATCAAATGGAACTTTACAGAAAGGTGGTGGCAGCGACGATGGTGGAAGTTTGCTCACAGTTGGATTCCAAATTCTGGTGAATAGTCTTCCATCTGCTAAGCTCACAATGGAGTCAGTTGATACAGTGAACAATCTCATCTCATGCACCATTCAGAAGATCAAAGCTGCACTTCGAGTTGCATAA 2376 0.4394 MGFESVNSSFKVARLVTDFSIPFSSSMQNSSTFFSSQRKMEGQSEIGLTSESLDTSMIGRMREDEYESRSGSDNFDLEGISGDDQDGDDGQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRGENSMMKEAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSMANPMSLPTSNSGLELGIGRNGFGGGSSSHGASLPMGLDLGDGPAVPGLRSPMGLMGNSNDVQLERSVLIDLALAAMDELLKMAQTDNPIWIKGLDGERDILNHEEYSRSFSSCIGPKPTGFVSEATRETGIVIINSLALMETLMDANRYADMFQSLIARSVNLDVLSGGIGGTRNGAIHLMHAEVQLLSPLVPVRQVKILRFCKQHAEGVWAVVDVSVEIGHDAANAQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHNLYRPLIISGSGFGAHRWIATLQRQCEGLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDGQSLNVVMSGGDSAYVALLPSGFAIVPDGNNSSGYGASNGTLQKGGGSDDGGSLLTVGFQILVNSLPSAKLTMESVDTVNNLISCTIQKIKAALRVA 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05225 791 ProSiteProfiles START domain profile. 293 529 IPR002913 GO:0008289
Trre2g05225 791 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Trre2g05225 791 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Trre2g05225 791 Pfam Homeodomain 95 150 IPR001356 GO:0003677
Trre2g05225 791 SUPERFAMILY Bet v1-like 295 526 - -
Trre2g05225 791 SMART START_1 302 526 IPR002913 GO:0008289
Trre2g05225 791 MobiDBLite consensus disorder prediction 34 56 - -
Trre2g05225 791 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 91 788 IPR042160 -
Trre2g05225 791 SUPERFAMILY Homeodomain-like 81 152 IPR009057 -
Trre2g05225 791 Pfam START domain 303 525 IPR002913 GO:0008289
Trre2g05225 791 Gene3D - 82 167 - -
Trre2g05225 791 MobiDBLite consensus disorder prediction 57 72 - -
Trre2g05225 791 MobiDBLite consensus disorder prediction 34 106 - -
Trre2g05225 791 SUPERFAMILY Bet v1-like 553 785 - -
Trre2g05225 791 CDD START_ArGLABRA2_like 297 525 - -
Trre2g05225 791 CDD homeodomain 94 152 IPR001356 GO:0003677
Trre2g05225 791 FunFam Homeobox-leucine zipper protein HDG1 81 168 - -
Trre2g05225 791 Coils Coil 146 166 - -
Trre2g05225 791 SMART HOX_1 93 156 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05225 Trre-Chr2 59271231 59275535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05225 3 788 Homeobox Transcription Factor Family AT3G61150 59.449 0.0 911
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre2g05225 START 3.3e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05225 K09338 - gmx:100785102 1236.86