Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05219 ATGGTTCCATCACTTTGTGCCAATAGTTGTGGTTATTATGGTTACGCTTCAAATAAGAACCTTTGCTCAAAGTGTTACAACGAGTATCTCAAAGAAAACATTGCCAAACCAAATATTAATGATATTTGTGATGCTGTGGAAGCTATTTCTCTCAATGAGAACGAGAAGATGAAGAAGAAAAATAGGTGCAAGAGTTGCAACAAAAAAGTGGGACTACTAGGTTTCAATTGCCGTTGCGGGGACATGTTTTGTGGAATGCATAGATACCCAGAGGAGCATGCATGCAAAGTGAATCTAATGGAGATTGGTCGCAAAATATTGGAAAAAAAAAATCCATTATGTATAGCTGATAAGTTAGAACATCGAATCTAA 372 0.3656 MVPSLCANSCGYYGYASNKNLCSKCYNEYLKENIAKPNINDICDAVEAISLNENEKMKKKNRCKSCNKKVGLLGFNCRCGDMFCGMHRYPEEHACKVNLMEIGRKILEKKNPLCIADKLEHRI 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05219 123 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Trre2g05219 123 ProSiteProfiles Zinc finger AN1-type profile. 57 103 IPR000058 GO:0008270
Trre2g05219 123 SMART AN1_Zf_4 63 100 IPR000058 GO:0008270
Trre2g05219 123 Gene3D - 1 43 - -
Trre2g05219 123 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 120 - -
Trre2g05219 123 SUPERFAMILY AN1-like Zinc finger 50 117 IPR035896 -
Trre2g05219 123 Gene3D - 44 117 IPR035896 -
Trre2g05219 123 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Trre2g05219 123 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 35 - -
Trre2g05219 123 Pfam A20-like zinc finger 4 27 IPR002653 GO:0003677|GO:0008270
Trre2g05219 123 Pfam AN1-like Zinc finger 63 96 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05219 Trre-Chr2 59217127 59217498 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05219 5 120 C2H2 Transcription Factor Family AT3G52800 33.548 8.90e-25 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05219 - - tpra:123902604 214.927