Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05218 ATGGCTCCGTCCGCGGAATACAACGCCAATTCCTCCACTGGCGAGTCTCAAAGATCCACTCCAACGCCGTTTCTCACAAAGACATATCATCTCGTTGATGACCGCACCATCAACGATGTCATTTCATGGAACGATACTGGAACTTCCTTCATCGTTTGGAATCCTACCGTTTTCGCTAGGGATTTGCTTCCTAAATATTTCAAACACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACTTATGGATTTAAAAAACTTGTACCTGATCGGTGGGAATTCTCTAACGAATGTTTCAGAAGAGGCGAAAAACGCCTTCTCTCTGATATTCAGCGACGGAAAATCGTTTCAGCATCGCCGGCGCCGGCTTCAAATGCAACAGTGGCGGTTCCGACGGGGAAGACGATCGTGTCGCCTTCAATCTCAGGGGAGGAGCAGGTCATTTCTTCGAATTCTTCACCGTCGATTGCGCCGGCGGAGATTTTGGACGAGAACGAGAAGCTGAGAAAGGAGAATATGCAATTAACCAAGGAAATAGAGAACATAAAATCGCTCTACAACAATATATTCAATCTTTTGTCAAATTATGCAAAATCTCAAGCTGAAGGTGGTGCGCAAGGAAAAGAGTATTGTTCCACGGCGGCGACGACGCTTCATTTGTTGCCGGAGAATCGATGCGACGGAGAAGATGAAGCGGCGGTGGAGGATATAAACCCGAAACTGTTTGGTGTAGCGATTGGTACGAAACGAGCGAGAGAAGAAGAACGGTGTGTGGAGGATAATACGGTGTTGAGCCTGCATCAACCAGTTTATGCGGATGTGAAATCAAAGCCGTTGGATTTAATTAATGGCGAAAAGAGGAAAACGTTGTGGCTAAATCGGTGCTATAGAGAGAATCAGAGCGTATGA 909 0.462 MAPSAEYNANSSTGESQRSTPTPFLTKTYHLVDDRTINDVISWNDTGTSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKLVPDRWEFSNECFRRGEKRLLSDIQRRKIVSASPAPASNATVAVPTGKTIVSPSISGEEQVISSNSSPSIAPAEILDENEKLRKENMQLTKEIENIKSLYNNIFNLLSNYAKSQAEGGAQGKEYCSTAATTLHLLPENRCDGEDEAAVEDINPKLFGVAIGTKRAREEERCVEDNTVLSLHQPVYADVKSKPLDLINGEKRKTLWLNRCYRENQSV 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05218 302 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g05218 302 MobiDBLite consensus disorder prediction 1 22 - -
Trre2g05218 302 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Trre2g05218 302 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g05218 302 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g05218 302 FunFam Heat stress transcription factor B-4 16 114 - -
Trre2g05218 302 Coils Coil 165 185 - -
Trre2g05218 302 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g05218 302 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g05218 302 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g05218 302 Gene3D - 16 114 IPR036388 -
Trre2g05218 302 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 197 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05218 Trre-Chr2 59211459 59212474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05218 13 264 HSF AT5G62020 50.362 1.04e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre2g05218 HSF_DNA-bind 1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05218 K09419 - gmx:100780987 380.948