Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g05217 ATGGTTTCATCACTTTGTGCCAATGGCTGCGGTTTTTATGGTTCTCTTTCAACTAAGAACCTTTGTTCAAAGTGTTACAACGAGTATCTCAAAGAAAACATTGCCAAACCAAATATTAATGATATTTGTGATGCTGTGGAAGCTATTTCTCTCAATGAGAAAGAGAAGATGAAGAAGAAAAATAGGTGCAAGAGTTGCAACAAAAAAGTGGGACTATTAGGTTTCAATTGCCGTTGTGGGGACATGTTTTGTGGAATGCATAGATACCCAGAGGAGCATGCATGCAAAGTGAATCTAATGGAGATTGGTCGCAAAATATTGGAAAAACAAAATCCATTATGTATAGCTGATAAGTTAGAACACCGAATCTAA 372 0.3656 MVSSLCANGCGFYGSLSTKNLCSKCYNEYLKENIAKPNINDICDAVEAISLNEKEKMKKKNRCKSCNKKVGLLGFNCRCGDMFCGMHRYPEEHACKVNLMEIGRKILEKQNPLCIADKLEHRI 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g05217 123 Gene3D - 46 106 IPR035896 -
Trre2g05217 123 ProSiteProfiles Zinc finger AN1-type profile. 57 103 IPR000058 GO:0008270
Trre2g05217 123 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Trre2g05217 123 SMART AN1_Zf_4 63 100 IPR000058 GO:0008270
Trre2g05217 123 Gene3D - 1 45 - -
Trre2g05217 123 FunFam Zinc finger AN1-type containing 6 38 118 - -
Trre2g05217 123 Pfam A20-like zinc finger 4 27 IPR002653 GO:0003677|GO:0008270
Trre2g05217 123 SUPERFAMILY AN1-like Zinc finger 50 117 IPR035896 -
Trre2g05217 123 PANTHER AN1-TYPE ZINC FINGER PROTEIN 4 120 - -
Trre2g05217 123 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Trre2g05217 123 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 36 - -
Trre2g05217 123 Pfam AN1-like Zinc finger 63 96 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g05217 Trre-Chr2 59206273 59206644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g05217 5 120 C2H2 Transcription Factor Family AT3G52800 35.484 2.69e-26 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g05217 - - tpra:123902604 223.016